Report for Sequence Feature Glyma13g01920
Feature Type: gene_model
Chromosome: Gm13
Start: 1692068
stop: 1699702
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g01920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G36050 AT
Annotation by Michelle Graham. TAIR10: Endoplasmic reticulum vesicle transporter protein | chr1:13450467-13453055 FORWARD LENGTH=386
SoyBase E_val: 0 ISS
GO:0006633 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2667
KOG
COPII vesicle protein
JGI ISS
PTHR10984 Panther
SEROLOGICALLY DEFINED BREAST CANCER ANTIGEN NY-BR-84-RELATED
JGI ISS
PF07970 PFAM
Endoplasmic reticulum vesicle transporter
JGI ISS
UniRef100_B9RJH7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Endoplasmic reticulum-Golgi intermediate compartment protein, putative n=1 Tax=Ricinus communis RepID=B9RJH7_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LVZ6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVZ6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g01920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g01920
Paralog Evidence Comments
Glyma14g34600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g01920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g088200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g01920
Coding sequences of Glyma13g01920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g01920.1 sequence type=CDS gene model=Glyma13g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGAGCATAATAAGCAAGCTCCGCAACCTAGACGCCTACCCTAAAATCAACGAGGATTTCTACAGCCGCACGCTCTCCGGCGGTGTCATCACTCTCGCTTCCTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCCGGTTGTATCTTCACGCTGTCACCGAGACCAAGCTTGTCGTCGACACTTCCAGAGCCGAAACGCTGCGTATCAATTTTGATGTTACGTTTCCTGCGCTTCCATGTTCCATACTCAGTCTTGATGCCATGGACATCAGCGGAGAGCAGCGTCTAGATGTTAAACACGATATAATCAAGAAGAGATTAGACTCTCGTGGCAATGTGATAGAAACAAGGCAAGAAGGAATTGGTGCTCCCAAGATTGAAAAGCCATTGCAGAGGCATGGAGGCAGGCTCGAGCACAATGAGACTTATTGTGGTTCCTGTTATGGTTCTGAAGTGTCAGATGATGATTGTTGTAATTCCTGTGAGGATGTTCGTGAAGCATACCGTAAGAAAGGTTGGGCACTTTCAAATCCTGATTTAATTGACCAGTGCAAAAGAGAAGGATTCTTACAAAGAATCAAGGATGAAGAAGGTGAAGGATGCAATGTGTATGGTTTCTTGGAAGTAAATAAGGTTGCAGGGAATTTTCATTTTGCACCTGGGAAAAGCTTTCAGCAATCTGGTGTACATGTACATGACCTGCTGGCTTTTCAAAAGGATTCTTTTAATTTAAGTCACCACATCAACAGATTAACTTTCGGAGAGTATTTCCCTGGTGTTGTTAATCCTCTTGACAACGTGCATTGGACACAAGAAACACCAAGTGGGATGTACCAGTATTTTATTAAGGTTGTGCCTACAGTATACACTGATGTGAGTGGGCATACTATCCAGTCAAACCAGTTCTCTGTTACAGAACACTTCAGGACTGGAGACATGGGCCGTCTGCAGTCCCTTCCCGGAGTTTTCTTTTTCTATGACCTCTCTCCAATTAAGGTTACTTTTACGGAAGAAAATGTCTCATTCTTACATTTTCTTACTAATGTTTGTGCCATAGTTGGAGGTATTTTCACCGTTTCTGGAATACTAGATTCATTCATCTATCACGGTCAAAGGGCTATCAAGAAGAAGATGGAACTTGGTAAATTTAACTGA
Predicted protein sequences of Glyma13g01920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g01920.1 sequence type=predicted peptide gene model=Glyma13g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESIISKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFYSELRLYLHAVTETKLVVDTSRAETLRINFDVTFPALPCSILSLDAMDISGEQRLDVKHDIIKKRLDSRGNVIETRQEGIGAPKIEKPLQRHGGRLEHNETYCGSCYGSEVSDDDCCNSCEDVREAYRKKGWALSNPDLIDQCKREGFLQRIKDEEGEGCNVYGFLEVNKVAGNFHFAPGKSFQQSGVHVHDLLAFQKDSFNLSHHINRLTFGEYFPGVVNPLDNVHWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRTGDMGRLQSLPGVFFFYDLSPIKVTFTEENVSFLHFLTNVCAIVGGIFTVSGILDSFIYHGQRAIKKKMELGKFN*