SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78160 | AT | Annotation by Michelle Graham. TAIR10: pumilio 7 | chr1:29407900-29410184 FORWARD LENGTH=650 | SoyBase | E_val: 4.00E-144 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003729 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mRNA binding | SoyBase | N/A | ISS |
| KOG2049 | KOG | Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) | JGI | ISS | |
| PTHR12537 | Panther | RNA BINDING PROTEIN PUMILIO-RELATED | JGI | ISS | |
| PTHR12537:SF13 | Panther | PUMILIO-RELATED | JGI | ISS | |
| PF00806 | PFAM | Pumilio-family RNA binding repeat | JGI | ISS | |
| UniRef100_G7KAF0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pumilio domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KAF0_MEDTR | SoyBase | E_val: 1.00E-167 | ISS |
| UniRef100_UPI000233BAFD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BAFD related cluster n=1 Tax=unknown RepID=UPI000233BAFD | SoyBase | E_val: 0 | ISS |
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Glyma13g01880 not represented in the dataset |
Glyma13g01880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g34725 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g088600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g01880.3 sequence type=transcript gene model=Glyma13g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACAAAACAACAACAGAACGTAACAAACAAAGCACAATATCTCTCGAATCGCACAAAAGAGAAAAGAGAGAAGAAGCAGCACCCACCTGTTATGCCCTACTGCTCTCAGAAAAGTGCCCTTTTTGGCTGAAAAAAACGGCTAGTGCAGTTGCAGTGTGGTAGTGGTAGTGCTGATTTTCCCTGAACCGTACCCTACCCTTGTCCCTATCAAATAACCCAAAACCTCTTTCTGTATCCCTGAGTTTCTCGCTCCCACCCTTTCTCCCAAATGTGCAACAAATCCTCACAGAACTGATTCACACTCACCACGCTACTACTCTGTTTTAACCCTAACTGACCAGTACTGCCACCTGTCCACAAAAACACCATCATTTCATTTCCCACTCTTTTCTATTTCTATTTCCTATGTTTTCACTCCAATTTATTCCTATTCCCCTGTTTTTTCTCATTTTGTCACTCTCCATTCAAAACCCTGTTGCTCATATTTGAATCTTCTTTCTCTTCTTTCATCTTTGTCTTTCTACTTCCCTTCTTTCTTTTGGGTTTTTGATCAAAATATCCCAAAAATACGCCATGAGAAACGAAGAGCTAGGAGGAATGTGGTTGAACCGGTTTTCCAATCTTAATACACTCAACAACACCCCCCTTCACCGTGGCCACGTCACCTCACAACCACAATCTTCTTCGAGTGTTTTCTCCATGATCCATGATGATTGTGTTGATGTTGATGTGACGCTGTCTAATGATTTTGCTAGAATGAGTGTTTTTAACGAACTAGGGAATGTTGGTGTCAAAGCCAGAGGAAATGGTTATGGATATGGTGCTAATGTTATGGACTCATCATACCCACATGCATTCTCACACTCACTTTGTTCTTTTGATGCACATGTTCATGAAGAAACGGCTACCCCATTACCTATTTGGGGTGTTTCAGTGTCTTCTGATTTGAAGGGACACACTTTTGGACCCCCAATGGAGTTTTCTTCTCATACCCAAAGGAGTAACCCTTGTTATGGACAGGTTCCACTTCAGAACCCTTTTCATGCTACAAGGCCTTTTGCAATGGACTGTGATGTGAAAAGTCCCTTTCTGATGCAACAACAACCCAAGGTTGCTATGAATGTTAACACTCCATCTTCACATTACTTCCCTGCAGCAAAAGAAAGAGGAACGACAAGGGTAGCTGTAAACCCCAATGGTGGTGATTTTTCTCATTCTAGAGAGGACCCTTTGGGGTTTCAATGTGATGGTGGTTTTATCTTGCAAGAGAAGGATGTGAAATGTTGTAATGGTTGTAGAGGCTGCAATTCTTTGTGGGGTTGCAATGAGAGTTTATCCTTACCAGTTCAAGAAGTGGGAGTGGGTGAGGAACTTCCTCAACACATTCCTTCTCGTGTTGCTCCCACTAAGCACGAAAAGAATGGTGTTCTCGCGAGCGACGTTTCACCTTCTTCGCAGCCGTTGTTGTACAATTTTAGTCCTTTGGCTAAGTTCCAAGGCTACATTTATTACCTGGCTAAGGATCAGAACGGTTGCCGCTTCCTGCAGAGGATGATTGATGAGGGCACCTCCGAAGATGTGCTAGTATTGTTCAATGGAGTCATAGATGATGTTGTTGAGCTTATGATTGACCCTTTTGGGAACTACCTCGTGCAAAAGCTGCTTGATGTGTGTGGAGAAGATGAAAGGTTGCAGGTTGTGTCAATGTTGACTGAAGAACCAGGGCAGCTAGTCAAAACCTCTTTGAATCTACACGGGACTCGGGTGGTGCAGAAGTTGATCACCACTGTGGACTCTAGAAAACAAATTGCAATGCTGAGGTCTGCCATTCAATCTGGTTTTCTTGCCCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGAAATTTCTAACAGGTAAGTCAATTGTGGAAGGAACAAAATTCACCATCTGTTGAGGGGTACTCTCCTATGACCATAATGGTGAAGATTCTATTCTTGGCCAGTTAGCCTAAATATGTTCCTTATTTTCTTTCCCAGTTAGGAATTCTTAAAAGGCTAATTCTCT
>Glyma13g01880.2 sequence type=CDS gene model=Glyma13g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAACGAAGAGCTAGGAGGAATGTGGTTGAACCGGTTTTCCAATCTTAATACACTCAACAACACCCCCCTTCACCGTGGCCACGTCACCTCACAACCACAATCTTCTTCGAGTGTTTTCTCCATGATCCATGATGATTGTGTTGATGTTGATGTGACGCTGTCTAATGATTTTGCTAGAATGAGTGTTTTTAACGAACTAGGGAATGTTGGTGTCAAAGCCAGAGGAAATGGTTATGGATATGGTGCTAATGTTATGGACTCATCATACCCACATGCATTCTCACACTCACTTTGTTCTTTTGATGCACATGTTCATGAAGAAACGGCTACCCCATTACCTATTTGGGGTGTTTCAGTGTCTTCTGATTTGAAGGGACACACTTTTGGACCCCCAATGGAGTTTTCTTCTCATACCCAAAGGAGTAACCCTTGTTATGGACAGGTTCCACTTCAGAACCCTTTTCATGCTACAAGGCCTTTTGCAATGGACTGTGATGTGAAAAGTCCCTTTCTGATGCAACAACAACCCAAGGTTGCTATGAATGTTAACACTCCATCTTCACATTACTTCCCTGCAGCAAAAGAAAGAGGAACGACAAGGGTAGCTGTAAACCCCAATGGTGGTGATTTTTCTCATTCTAGAGAGGACCCTTTGGGGTTTCAATGTGATGGTGGTTTTATCTTGCAAGAGAAGGATGTGAAATGTTGTAATGGTTGTAGAGGCTGCAATTCTTTGTGGGGTTGCAATGAGAGTTTATCCTTACCAGTTCAAGAAGTGGGAGTGGGTGAGGAACTTCCTCAACACATTCCTTCTCGTGTTGCTCCCACTAAGCACGAAAAGAATGGTGTTCTCGCGAGCGACGTTTCACCTTCTTCGCAGCCGTTGTTGTACAATTTTAGTCCTTTGGCTAAGTTCCAAGGCTACATTTATTACCTGGCTAAGGATCAGAACGGTTGCCGCTTCCTGCAGAGGATGATTGATGAGGGCACCTCCGAAGATGTGCTAGTATTGTTCAATGGAGTCATAGATGATGTTGTTGAGCTTATGATTGACCCTTTTGGGAACTACCTCGTGCAAAAGCTGCTTGATGTGTGTGGAGAAGATGAAAGGTTGCAGGTTGTGTCAATGTTGACTGAAGAACCAGGGCAGCTAGTCAAAACCTCTTTGAATCTACACGGGACTCGGGTGGTGCAGAAGTTGATCACCACTGTGGACTCTAGAAAACAAATTGCAATGCTGAGGTCTGCCATTCAATCTGGTTTTCTTGCCCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGTTTATTTTTTATGCTGCTACAAAGTTTTGTGTGGAAATAGCTACTCATCAACATGGGTGTTGTGTACTACAACGTTGCATTGATTATTCCACCGGAAAATACAAAGATATGCTGGTAAAGGAAATATGCAGACATGGGCATCTCCTTGCTCAAGATCCATTTGGAAATTATGTTGTTCAGTATATTATAGAGATGGAGAACCCAAGTGCCTCATTGAAACTGCATTCTCAGTTCAAAGGGAACTACGCCAACCTCTCAATGCAAAAATTTAGCAGTCATGTAGTTGAAAAATGCCTCGTGCATATTGTAGAGATCAGGTCAAGGATAGTCCAAGAATTGTCGTCTTTTCCTCACCTTGAGCGGTTGCTACAAGACCCATATGCCAACTATGTTGTTCAACGTGCTCTCGGAGTGACCAAGGGCTCTCTGCATGCATCTCTAGCCGAAGCTGTTCGCCCCTACAAAACATTGCGCAGCAGCCCTTATTGCAAAAGGATTTTCTCGAGGAGCCTGCTTAACAAGTGA >Glyma13g01880.3 sequence type=CDS gene model=Glyma13g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAAACGAAGAGCTAGGAGGAATGTGGTTGAACCGGTTTTCCAATCTTAATACACTCAACAACACCCCCCTTCACCGTGGCCACGTCACCTCACAACCACAATCTTCTTCGAGTGTTTTCTCCATGATCCATGATGATTGTGTTGATGTTGATGTGACGCTGTCTAATGATTTTGCTAGAATGAGTGTTTTTAACGAACTAGGGAATGTTGGTGTCAAAGCCAGAGGAAATGGTTATGGATATGGTGCTAATGTTATGGACTCATCATACCCACATGCATTCTCACACTCACTTTGTTCTTTTGATGCACATGTTCATGAAGAAACGGCTACCCCATTACCTATTTGGGGTGTTTCAGTGTCTTCTGATTTGAAGGGACACACTTTTGGACCCCCAATGGAGTTTTCTTCTCATACCCAAAGGAGTAACCCTTGTTATGGACAGGTTCCACTTCAGAACCCTTTTCATGCTACAAGGCCTTTTGCAATGGACTGTGATGTGAAAAGTCCCTTTCTGATGCAACAACAACCCAAGGTTGCTATGAATGTTAACACTCCATCTTCACATTACTTCCCTGCAGCAAAAGAAAGAGGAACGACAAGGGTAGCTGTAAACCCCAATGGTGGTGATTTTTCTCATTCTAGAGAGGACCCTTTGGGGTTTCAATGTGATGGTGGTTTTATCTTGCAAGAGAAGGATGTGAAATGTTGTAATGGTTGTAGAGGCTGCAATTCTTTGTGGGGTTGCAATGAGAGTTTATCCTTACCAGTTCAAGAAGTGGGAGTGGGTGAGGAACTTCCTCAACACATTCCTTCTCGTGTTGCTCCCACTAAGCACGAAAAGAATGGTGTTCTCGCGAGCGACGTTTCACCTTCTTCGCAGCCGTTGTTGTACAATTTTAGTCCTTTGGCTAAGTTCCAAGGCTACATTTATTACCTGGCTAAGGATCAGAACGGTTGCCGCTTCCTGCAGAGGATGATTGATGAGGGCACCTCCGAAGATGTGCTAGTATTGTTCAATGGAGTCATAGATGATGTTGTTGAGCTTATGATTGACCCTTTTGGGAACTACCTCGTGCAAAAGCTGCTTGATGTGTGTGGAGAAGATGAAAGGTTGCAGGTTGTGTCAATGTTGACTGAAGAACCAGGGCAGCTAGTCAAAACCTCTTTGAATCTACACGGGACTCGGGTGGTGCAGAAGTTGATCACCACTGTGGACTCTAGAAAACAAATTGCAATGCTGAGGTCTGCCATTCAATCTGGTTTTCTTGCCCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGAAATTTCTAACAGGTAAGTCAATTGTGGAAGGAACAAAATTCACCATCTGTTGA
>Glyma13g01880.2 sequence type=predicted peptide gene model=Glyma13g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNEELGGMWLNRFSNLNTLNNTPLHRGHVTSQPQSSSSVFSMIHDDCVDVDVTLSNDFARMSVFNELGNVGVKARGNGYGYGANVMDSSYPHAFSHSLCSFDAHVHEETATPLPIWGVSVSSDLKGHTFGPPMEFSSHTQRSNPCYGQVPLQNPFHATRPFAMDCDVKSPFLMQQQPKVAMNVNTPSSHYFPAAKERGTTRVAVNPNGGDFSHSREDPLGFQCDGGFILQEKDVKCCNGCRGCNSLWGCNESLSLPVQEVGVGEELPQHIPSRVAPTKHEKNGVLASDVSPSSQPLLYNFSPLAKFQGYIYYLAKDQNGCRFLQRMIDEGTSEDVLVLFNGVIDDVVELMIDPFGNYLVQKLLDVCGEDERLQVVSMLTEEPGQLVKTSLNLHGTRVVQKLITTVDSRKQIAMLRSAIQSGFLALIKDLNGNHVIQRCLQYFSCKDNEFIFYAATKFCVEIATHQHGCCVLQRCIDYSTGKYKDMLVKEICRHGHLLAQDPFGNYVVQYIIEMENPSASLKLHSQFKGNYANLSMQKFSSHVVEKCLVHIVEIRSRIVQELSSFPHLERLLQDPYANYVVQRALGVTKGSLHASLAEAVRPYKTLRSSPYCKRIFSRSLLNK* >Glyma13g01880.3 sequence type=predicted peptide gene model=Glyma13g01880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNEELGGMWLNRFSNLNTLNNTPLHRGHVTSQPQSSSSVFSMIHDDCVDVDVTLSNDFARMSVFNELGNVGVKARGNGYGYGANVMDSSYPHAFSHSLCSFDAHVHEETATPLPIWGVSVSSDLKGHTFGPPMEFSSHTQRSNPCYGQVPLQNPFHATRPFAMDCDVKSPFLMQQQPKVAMNVNTPSSHYFPAAKERGTTRVAVNPNGGDFSHSREDPLGFQCDGGFILQEKDVKCCNGCRGCNSLWGCNESLSLPVQEVGVGEELPQHIPSRVAPTKHEKNGVLASDVSPSSQPLLYNFSPLAKFQGYIYYLAKDQNGCRFLQRMIDEGTSEDVLVLFNGVIDDVVELMIDPFGNYLVQKLLDVCGEDERLQVVSMLTEEPGQLVKTSLNLHGTRVVQKLITTVDSRKQIAMLRSAIQSGFLALIKDLNGNHVIQRCLQYFSCKDNEKFLTGKSIVEGTKFTIC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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