SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67170 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). | chr1:25127727-25129145 FORWARD LENGTH=359 | SoyBase | E_val: 8.00E-42 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1LVX3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVX3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q01JY9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0116M22.10 protein n=1 Tax=Oryza sativa RepID=Q01JY9_ORYSA | SoyBase | E_val: 9.00E-48 | ISS |
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Glyma13g01600 not represented in the dataset |
Glyma13g01600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g090800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g01600.2 sequence type=transcript gene model=Glyma13g01600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAATTTAAAAAAAAATGAAGGAAACTCGGGTTTTTGCACATATACGTTTCTTTTCGGTTTCGTGGGATTACGTTTTCTTGTGTTGATAAAAATTTATAAATTGGAGGAGACTTGCGCAGTTTATGCCTTTCATCGGTTCAGTGAAAAGGGGATGCCTACTGCGCCCATTGTCTCCTTCAACGACGCCAAATAAATACCTCAAAACGGGGCAAGGCTCTGCCGTCATTTGAGGGGTGCCCTGTGAAAGTTCCTGGGATGATGCGACGTGGTTCTGGTTTAGGTTCTGCTGCTTCTCACCGTTCTCGGGAGTCCCTTCCTCTTCCTCAGCTGTTGGAGAATAAAATTGCTGCTCAGGAATCAGAAATAGAGCAGCTTGTAAGTGATAACCGTGGTCTGGCTAGTGGACATGTGGCCTTAAGAGAGGCGCTTGTTGCTGCTGCGCAGGATGTGCAAAAGCTGAAGTCACACATTAGAAGCATCCAGACTGAGAGTGACATTCAGATCAGAATTCTAGTAGATAAGATTTCCAAAGGGGAGGTTGATATTAGGGCCAGTGATAGTGTGAAGAAGGACCTACAAAAGGCCCATATTGAGGCGCAGAGCTTGGCAGCTTCCAGGCAGGAAGTGAGTGCCCAAATTCATCGAGCGACTCAGGAACTGAAGAAGGTCCATGGTGATGTCAAGAGTATTCCGGATTTGCAGGCTGAACTGGACAGTTTATTGCAGGAGCACCAGAGGTTACGTGGCACATTTGAATATGAAAAGAACAAAAACATAGAGCTAGTGGATTACATGAAAGCAAAAGAGAAGAATCTGATAGCGATGGCAAGAGAAGTTGAAGTGTTACGAGCTGAGATTTTAAATGCTGAGAAAAGAGTAAATGCTCCTAATCTGTTTGGGGCTGCTACCCCTGGACACAGCAGCGGTCCATTTGCTGATGTTTATGGGAGAGTTCATGGTCAGATGGCTGCTGGCCAAGTAGGAGAGAGTATGGTACCAGTTGGTGAAAGCAATGGAGTAGCAGCCATCAATAGTGCTGGTGTTAGTGGTGCTCTTTGGTCGAGTCCATATGATCCCTCAGTTGGTCGGAGGTGAAGTTTAATAATAGTTAATCAGATGGAGCTTGACTTCAGCTTTTGCCGGTAAAATACATGGGAACTGCTGGTTTTTCTACGTAAATTTCACAGATTGGGTGGTTTTATCTCAATAGTTAATACAGTACAATTTTGTGAATTGTCGAACCTAATCTGCAAAATTGAAGAGGCCAAAGGTCTATGTCTCAAACAAAACTATTGGTAAAATGAATTGAAAGTCTGGTCTGACATGACCTATTTAATGAGCTATATAATACTGTTCTTAAGTGTATAACCTATAGAGGGCAATCCTATTTTTCAGAATGCACATGAAACATGCTCACGTTTTGTTTTCCATCCAAGATGACGAACTGTTTGTAAATCACTTTTCTTGCTGGCTACAAG
>Glyma13g01600.1 sequence type=CDS gene model=Glyma13g01600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCGACGTGGTTCTGGTTTAGGTTCTGCTGCTTCTCACCGTTCTCGGGAGTCCCTTCCTCTTCCTCAGCTGTTGGAGAATAAAATTGCTGCTCAGGAATCAGAAATAGAGCAGCTTGTAAGTGATAACCGTGGTCTGGCTAGTGGACATGTGGCCTTAAGAGAGGCGCTTGTTGCTGCTGCGCAGGATGTGCAAAAGCTGAAGTCACACATTAGAAGCATCCAGACTGAGAGTGACATTCAGATCAGAATTCTAGTAGATAAGATTTCCAAAGGGGAGGTTGATATTAGGGCCAGTGATAGTGTGAAGAAGGACCTACAAAAGGCCCATATTGAGGCGCAGAGCTTGGCAGCTTCCAGGCAGGAAGTGAGTGCCCAAATTCATCGAGCGACTCAGGAACTGAAGAAGGTCCATGGTGATGTCAAGAGTATTCCGGATTTGCAGGCTGAACTGGACAGTTTATTGCAGGAGCACCAGAGGTTACGTGGCACATTTGAATATGAAAAGAACAAAAACATAGAGCTAGTGGATTACATGAAAGCAAAAGAGAAGAATCTGATAGCGATGGCAAGAGAAGTTGAAGTGTTACGAGCTGAGATTTTAAATGCTGAGAAAAGAGTAAATGCTCCTAATCTGTTTGGGGCTGCTACCCCTGGACACAGCAGCGGTCCATTTGCTGATGTTTATGGGAGAGTTCATGGTCAGATGGCTGCTGGCCAAGTAGGAGAGAGTATGGTACCAGTTGGTGAAAGCAATGGAGTAGCAGCCATCAATAGTGCTGGTGTTAGTGGTGCTCTTTGGTCGAGTCCATATGATCCCTCAGTTGGTCGGAGGTGA >Glyma13g01600.2 sequence type=CDS gene model=Glyma13g01600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCGACGTGGTTCTGGTTTAGGTTCTGCTGCTTCTCACCGTTCTCGGGAGTCCCTTCCTCTTCCTCAGCTGTTGGAGAATAAAATTGCTGCTCAGGAATCAGAAATAGAGCAGCTTGTAAGTGATAACCGTGGTCTGGCTAGTGGACATGTGGCCTTAAGAGAGGCGCTTGTTGCTGCTGCGCAGGATGTGCAAAAGCTGAAGTCACACATTAGAAGCATCCAGACTGAGAGTGACATTCAGATCAGAATTCTAGTAGATAAGATTTCCAAAGGGGAGGTTGATATTAGGGCCAGTGATAGTGTGAAGAAGGACCTACAAAAGGCCCATATTGAGGCGCAGAGCTTGGCAGCTTCCAGGCAGGAAGTGAGTGCCCAAATTCATCGAGCGACTCAGGAACTGAAGAAGGTCCATGGTGATGTCAAGAGTATTCCGGATTTGCAGGCTGAACTGGACAGTTTATTGCAGGAGCACCAGAGGTTACGTGGCACATTTGAATATGAAAAGAACAAAAACATAGAGCTAGTGGATTACATGAAAGCAAAAGAGAAGAATCTGATAGCGATGGCAAGAGAAGTTGAAGTGTTACGAGCTGAGATTTTAAATGCTGAGAAAAGAGTAAATGCTCCTAATCTGTTTGGGGCTGCTACCCCTGGACACAGCAGCGGTCCATTTGCTGATGTTTATGGGAGAGTTCATGGTCAGATGGCTGCTGGCCAAGTAGGAGAGAGTATGGTACCAGTTGGTGAAAGCAATGGAGTAGCAGCCATCAATAGTGCTGGTGTTAGTGGTGCTCTTTGGTCGAGTCCATATGATCCCTCAGTTGGTCGGAGGTGA
>Glyma13g01600.1 sequence type=predicted peptide gene model=Glyma13g01600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMRRGSGLGSAASHRSRESLPLPQLLENKIAAQESEIEQLVSDNRGLASGHVALREALVAAAQDVQKLKSHIRSIQTESDIQIRILVDKISKGEVDIRASDSVKKDLQKAHIEAQSLAASRQEVSAQIHRATQELKKVHGDVKSIPDLQAELDSLLQEHQRLRGTFEYEKNKNIELVDYMKAKEKNLIAMAREVEVLRAEILNAEKRVNAPNLFGAATPGHSSGPFADVYGRVHGQMAAGQVGESMVPVGESNGVAAINSAGVSGALWSSPYDPSVGRR* >Glyma13g01600.2 sequence type=predicted peptide gene model=Glyma13g01600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMRRGSGLGSAASHRSRESLPLPQLLENKIAAQESEIEQLVSDNRGLASGHVALREALVAAAQDVQKLKSHIRSIQTESDIQIRILVDKISKGEVDIRASDSVKKDLQKAHIEAQSLAASRQEVSAQIHRATQELKKVHGDVKSIPDLQAELDSLLQEHQRLRGTFEYEKNKNIELVDYMKAKEKNLIAMAREVEVLRAEILNAEKRVNAPNLFGAATPGHSSGPFADVYGRVHGQMAAGQVGESMVPVGESNGVAAINSAGVSGALWSSPYDPSVGRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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