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Report for Sequence Feature Glyma13g01590

Feature Type:gene_model
Chromosome:Gm13
Start:1294642
stop:1298181
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g01590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57815AT Annotation by Michelle Graham. TAIR10: Cytochrome c oxidase, subunit Vib family protein | chr5:23426753-23427637 FORWARD LENGTH=78 SoyBaseE_val: 6.00E-47ISS
GO:0006661GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004129GO-mf Annotation by Michelle Graham. GO Molecular Function: cytochrome-c oxidase activity SoyBaseN/AISS
PTHR11387Panther CYTOCHROME C OXIDASE POLYPEPTIDE VIB JGI ISS
PTHR11387:SF2Panther CYTOCHROME C OXIDASE POLYPEPTIDE VIB JGI ISS
PF02297PFAM Cytochrome oxidase c subunit VIb JGI ISS
UniRef100_B6STB2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c oxidase polypeptide VIb n=1 Tax=Zea mays RepID=B6STB2_MAIZE SoyBaseE_val: 4.00E-45ISS
UniRef100_I1LVX2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVX2_SOYBN SoyBaseE_val: 2.00E-50ISS

Expression Patterns of Glyma13g01590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g01590
ParalogEvidenceComments
Glyma17g07710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g01590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g090900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g01590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g01590
>Glyma13g01590.1   sequence type=CDS   gene model=Glyma13g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGATTGAACTGAAAACTGCACCTGCTGATTTTCGTTTTCCTACAACAAATCAAACCAGACATTGTTTCACTCGCTACATAGAGTTTCACAGATGCTTGGCAGCAAAGGGTGAAAACTCTGGTGAATGTGAGAGATTTGCTAAATATTACCGCTCCCTTTGCCCGGGTGAATGGGTTGAAAGGTGGAATGAACAGAGGGAGAGTGGGACTTTTCCAGGACCTCTTTGA
Predicted protein sequences of Glyma13g01590
>Glyma13g01590.1   sequence type=predicted peptide   gene model=Glyma13g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGENSGECERFAKYYRSLCPGEWVERWNEQRESGTFPGPL*






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