Glyma13g01570 - SoyBase

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Report for Sequence Feature Glyma13g01570

Feature Type:	gene_model
Chromosome:	Gm13
Start:	1274685
stop:	1277469
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g01570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28040	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr4:13940881-13942201 FORWARD LENGTH=359	SoyBase	E_val: 3.00E-100	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_B9SQE1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9SQE1_RICCO	SoyBase	E_val: 2.00E-131	ISS
UniRef100_C6TNF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TNF8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g01570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g01570

Paralog	Evidence	Comments
Glyma17g07690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g01570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g091100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g01570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g01570

Limit To All Plant Sequences

>Glyma13g01570.2   sequence type=transcript   gene model=Glyma13g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAGGAAAAAAATCATTACCTTACTCATCTTATTTTAAACAATTTTTTTTCTCTGTTAATAATGATAAATTTATAGAAAAGTGGATTACAAATTGAGTTTGTCTTGATATAAATAGATCTACCCCCTTCTCTTCCTCTTCATATATGTAATAGAAGGTGTCAAAGGATTTCAACTTTAGGCTCCATCTAAAAAAAATGGCTGGTTTGGCTAGCAATCTTCCTCTAATTGTTATGATAGGTCTGCAAATTCATTATGCAGCACTTGCCATATTCACAAGAGCCGCTCTCTTAGATGGGTTGAGTACAACGGTGTTTGTAGTATACAGGCAAGGCATAGCCACTTTGGCTTTGGCGCCTATATTTTTCTCTCCTAAGAGGAGACAATCAGTGAAAGATTCTTTGGGATTCAGGAGCTTCTTTTTGATGTTTGTGACCGCTCTTGTTGGAGTCACGGCAAATCAGAATGCATACTTCAAAGGATTATTTTATGCATCTTCTACTGCAGCTACCGCTATGAGTAATCTGATACCGGCATTAACGTTTGTAATTGCAGCAATTGCGGGATTTGAGAAAGTTGACATAAGCTTAAGAAGCACGGCCAAGATATTAGGGACAGTTTGTTGCGTGGCTGGAGCCTTAACCATGGCATTGGTCAAAGGACAGAAGCTGTTACACACGGAGTTCCTTCCTTCTATACATCTCACCGGCAGTCAAGGTGATGATTGGCTGCTGGGTTGCCTATTGCTCTTAGCAAGCAGTGTTTTTTGGTCATGTTGGATGATCCTGCAGGTACCAATCACTTCGTGCTGCCCAGACCATTTATTATCAACCTTTTGGATGTGTCTGTTTTCAACAATACAGGCTGCCCTATTTGCCCTGCTTTCAGAGTCGGATCTTCAAGCATGGATTTTGCAATCACCTTTACAGATTTCATGTTCTTTATATGCAGGAATCGGAATAGCGGTTAGCTTCTTCATTCAATCCTGGTGCATCTCAGAAAGAGGTCCCCTGTACTGTGCAATGTTCAACCCTTTGGCAACAGTCATCACTGCTTTGATAAGTGCAACTTTCCTAGAGGAAGAGGTGTACGTTGGAAGGTAATTAATACACTACTAGTATTATTTTTCTACGTACCTTTTATCTATTCATGAAGAAACTCAAACATCATTATTATTATTAGTATTATATGTGTGGCCTGATCATAATTCATATGCGTGATTCATTTTCAGTTTGGTAGGGGCTGTTGGAGTTATTGCCGGTTTATATGTTGTGCTTTGGGGTAAAGCCAAAGAGTTTGCTGAGATTAAACCAGAGGCACCACAATCATCAAACTTACTAGATGATGAGATAAGTAGTAGGATAGATTTGGAACAACCCCTTCTATCAGAGAAATTGTCTGAACATGCAACAGAAGCAGATAGCAAGGTGTAGCCATGATGATTAAACAAATAGAAGTTTTGGTGAAGTTTTGATCATTTCAGAATTGAAGAAACTGAAACATGGAACAAGTTGCAGCTTAAACAAATTTGGCTTAATTTCTTTCACCAAAATTTCTAACGAATAGAGTGTGAAAATAAATTCAAGCTCATGGCCTGGACTAATGGTAATTATGTAAGAGTGATAATATGTTTTAGGAGAAAAAAAGATATGAATTAAATTTTGTTTCCTTCCATCTCGTTTTCTTACATCCGTTATTCCGATTATGCTGGGAAAATTAGGAGTGCTGAGCTCGTATTATTATTATTTTTCCTGTAAATTGTTTCCCTCATGTTTGTGTTTTATTTTCATCATAGATATTGCAAACCACTTATTCATTTTTAAAATTTAAATAAATATCCTATATGA

>Glyma13g01570.3   sequence type=transcript   gene model=Glyma13g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAGGAAAAAAATCATTACCTTACTCATCTTATTTTAAACAATTTTTTTTCTCTGTTAATAATGATAAATTTATAGAAAAGTGGATTACAAATTGAGTTTGTCTTGATATAAATAGATCTACCCCCTTCTCTTCCTCTTCATATATGTAATAGAAGGTGTCAAAGGATTTCAACTTTAGGCTCCATCTAAAAAAAATGGCTGGTTTGGCTAGCAATCTTCCTCTAATTGTTATGATAGGTCTGCAAATTCATTATGCAGCACTTGCCATATTCACAAGAGCCGCTCTCTTAGATGGGTTGAGTACAACGGTGTTTGTAGTATACAGGCAAGGCATAGCCACTTTGGCTTTGGCGCCTATATTTTTCTCTCCTAAGAGGTAATAATTAAACCACTTTCTCCTCTTTTTATAGCTTAGTCTCATCTTCTTTCACTAACTCACATATACATGCTTACTTTTGATAACAGGAGACAATCAGTGAAAGATTCTTTGGGATTCAGGAGCTTCTTTTTGATGTTTGTGACCGCTCTTGTTGGGTACACTACTCTGCCAAACTCACTTGTAACATGCTGTTGAATTTATACCAAAGAGAAAATTTTAAAACTTACCCTTAATTTTTTTTATTTTTTCCTTGCAGAGTCACGGCAAATCAGAATGCATACTTCAAAGGATTATTTTATGCATCTTCTACTGCAGCTACCGCTATGAGTAATCTGATACCGGCATTAACGTTTGTAATTGCAGCAATTGCGGGATTTGAGAAAGTTGACATAAGCTTAAGAAGCACGGCCAAGATATTAGGGACAGTTTGTTGCGTGGCTGGAGCCTTAACCATGGCATTGGTCAAAGGACAGAAGCTGTTACACACGGAGTTCCTTCCTTCTATACATCTCACCGGCAGTCAAGGTGATGATTGGCTGCTGGGTTGCCTATTGCTCTTAGCAAGCAGTGTTTTTTGGTCATGTTGGATGATCCTGCAGGTACCAATCACTTCGTGCTGCCCAGACCATTTATTATCAACCTTTTGGATGTGTCTGTTTTCAACAATACAGGCTGCCCTATTTGCCCTGCTTTCAGAGTCGGATCTTCAAGCATGGATTTTGCAATCACCTTTACAGATTTCATGTTCTTTATATGCAGGAATCGGAATAGCGGTTAGCTTCTTCATTCAATCCTGGTGCATCTCAGAAAGAGGTCCCCTGTACTGTGCAATGTTCAACCCTTTGGCAACAGTCATCACTGCTTTGATAAGTGCAACTTTCCTAGAGGAAGAGGTGTACGTTGGAAGTTTGGTAGGGGCTGTTGGAGTTATTGCCGGTTTATATGTTGTGCTTTGGGGTAAAGCCAAAGAGTTTGCTGAGATTAAACCAGAGGCACCACAATCATCAAACTTACTAGATGATGAGATAAGTAGTAGGATAGATTTGGAACAACCCCTTCTATCAGAGAAATTGTCTGAACATGCAACAGAAGCAGATAGCAAGGTGTAGCCATGATGATTAAACAAATAGAAGTTTTGGTGAAGTTTTGATCATTTCAGAATTGAAGAAACTGAAACATGGAACAAGTTGCAGCTTAAACAAATTTGGCTTAATTTCTTTCACCAAAATTTCTAACGAATAGAGTGTGAAAATAAATTCAAGCTCATGGCCTGGACTAATGGTAATTATGTAAGAGTGATAATATGTTTTAGGAGAAAAAAAGATATGAATTAAATTTTGTTTCCTTCCATCTCGTTTTCTTACATCCGTTATTCCGATTATGCTGGGAAAATTAGGAGTGCTGAGCTCGTATTATTATTATTTTTCCTGTAAATTGTTTCCCTCATGTTTGTGTTTTATTTTCATCATAGATATTGCAAACCACTTATTCATTTTTAAAATTTAAATAAATATCCTATATGA

Coding sequences of Glyma13g01570

Limit To All Plant Sequences

>Glyma13g01570.1   sequence type=CDS   gene model=Glyma13g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTTTGGCTAGCAATCTTCCTCTAATTGTTATGATAGGTCTGCAAATTCATTATGCAGCACTTGCCATATTCACAAGAGCCGCTCTCTTAGATGGGTTGAGTACAACGGTGTTTGTAGTATACAGGCAAGGCATAGCCACTTTGGCTTTGGCGCCTATATTTTTCTCTCCTAAGAGGAGACAATCAGTGAAAGATTCTTTGGGATTCAGGAGCTTCTTTTTGATGTTTGTGACCGCTCTTGTTGGAGTCACGGCAAATCAGAATGCATACTTCAAAGGATTATTTTATGCATCTTCTACTGCAGCTACCGCTATGAGTAATCTGATACCGGCATTAACGTTTGTAATTGCAGCAATTGCGGGATTTGAGAAAGTTGACATAAGCTTAAGAAGCACGGCCAAGATATTAGGGACAGTTTGTTGCGTGGCTGGAGCCTTAACCATGGCATTGGTCAAAGGACAGAAGCTGTTACACACGGAGTTCCTTCCTTCTATACATCTCACCGGCAGTCAAGGTGATGATTGGCTGCTGGGTTGCCTATTGCTCTTAGCAAGCAGTGTTTTTTGGTCATGTTGGATGATCCTGCAGGTACCAATCACTTCGTGCTGCCCAGACCATTTATTATCAACCTTTTGGATGTGTCTGTTTTCAACAATACAGGCTGCCCTATTTGCCCTGCTTTCAGAGTCGGATCTTCAAGCATGGATTTTGCAATCACCTTTACAGATTTCATGTTCTTTATATGCAGGAATCGGAATAGCGGTTAGCTTCTTCATTCAATCCTGGTGCATCTCAGAAAGAGGTCCCCTGTACTGTGCAATGTTCAACCCTTTGGCAACAGTCATCACTGCTTTGATAAGTGCAACTTTCCTAGAGGAAGAGGTGTACGTTGGAAGTTTGGTAGGGGCTGTTGGAGTTATTGCCGGTTTATATGTTGTGCTTTGGGGTAAAGCCAAAGAGTTTGCTGAGATTAAACCAGAGGCACCACAATCATCAAACTTACTAGATGATGAGATAAGTAGTAGGATAGATTTGGAACAACCCCTTCTATCAGAGAAATTGTCTGAACATGCAACAGAAGCAGATAGCAAGGTGTAG

>Glyma13g01570.2   sequence type=CDS   gene model=Glyma13g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGTTTGGCTAGCAATCTTCCTCTAATTGTTATGATAGGTCTGCAAATTCATTATGCAGCACTTGCCATATTCACAAGAGCCGCTCTCTTAGATGGGTTGAGTACAACGGTGTTTGTAGTATACAGGCAAGGCATAGCCACTTTGGCTTTGGCGCCTATATTTTTCTCTCCTAAGAGGAGACAATCAGTGAAAGATTCTTTGGGATTCAGGAGCTTCTTTTTGATGTTTGTGACCGCTCTTGTTGGAGTCACGGCAAATCAGAATGCATACTTCAAAGGATTATTTTATGCATCTTCTACTGCAGCTACCGCTATGAGTAATCTGATACCGGCATTAACGTTTGTAATTGCAGCAATTGCGGGATTTGAGAAAGTTGACATAAGCTTAAGAAGCACGGCCAAGATATTAGGGACAGTTTGTTGCGTGGCTGGAGCCTTAACCATGGCATTGGTCAAAGGACAGAAGCTGTTACACACGGAGTTCCTTCCTTCTATACATCTCACCGGCAGTCAAGGTGATGATTGGCTGCTGGGTTGCCTATTGCTCTTAGCAAGCAGTGTTTTTTGGTCATGTTGGATGATCCTGCAGGTACCAATCACTTCGTGCTGCCCAGACCATTTATTATCAACCTTTTGGATGTGTCTGTTTTCAACAATACAGGCTGCCCTATTTGCCCTGCTTTCAGAGTCGGATCTTCAAGCATGGATTTTGCAATCACCTTTACAGATTTCATGTTCTTTATATGCAGGAATCGGAATAGCGGTTAGCTTCTTCATTCAATCCTGGTGCATCTCAGAAAGAGGTCCCCTGTACTGTGCAATGTTCAACCCTTTGGCAACAGTCATCACTGCTTTGATAAGTGCAACTTTCCTAGAGGAAGAGGTGTACGTTGGAAGGTAA

>Glyma13g01570.3   sequence type=CDS   gene model=Glyma13g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAATCTGATACCGGCATTAACGTTTGTAATTGCAGCAATTGCGGGATTTGAGAAAGTTGACATAAGCTTAAGAAGCACGGCCAAGATATTAGGGACAGTTTGTTGCGTGGCTGGAGCCTTAACCATGGCATTGGTCAAAGGACAGAAGCTGTTACACACGGAGTTCCTTCCTTCTATACATCTCACCGGCAGTCAAGGTGATGATTGGCTGCTGGGTTGCCTATTGCTCTTAGCAAGCAGTGTTTTTTGGTCATGTTGGATGATCCTGCAGGTACCAATCACTTCGTGCTGCCCAGACCATTTATTATCAACCTTTTGGATGTGTCTGTTTTCAACAATACAGGCTGCCCTATTTGCCCTGCTTTCAGAGTCGGATCTTCAAGCATGGATTTTGCAATCACCTTTACAGATTTCATGTTCTTTATATGCAGGAATCGGAATAGCGGTTAGCTTCTTCATTCAATCCTGGTGCATCTCAGAAAGAGGTCCCCTGTACTGTGCAATGTTCAACCCTTTGGCAACAGTCATCACTGCTTTGATAAGTGCAACTTTCCTAGAGGAAGAGGTGTACGTTGGAAGTTTGGTAGGGGCTGTTGGAGTTATTGCCGGTTTATATGTTGTGCTTTGGGGTAAAGCCAAAGAGTTTGCTGAGATTAAACCAGAGGCACCACAATCATCAAACTTACTAGATGATGAGATAAGTAGTAGGATAGATTTGGAACAACCCCTTCTATCAGAGAAATTGTCTGAACATGCAACAGAAGCAGATAGCAAGGTGTAG

Predicted protein sequences of Glyma13g01570

Limit To All Plant Sequences

>Glyma13g01570.1   sequence type=predicted peptide   gene model=Glyma13g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGLASNLPLIVMIGLQIHYAALAIFTRAALLDGLSTTVFVVYRQGIATLALAPIFFSPKRRQSVKDSLGFRSFFLMFVTALVGVTANQNAYFKGLFYASSTAATAMSNLIPALTFVIAAIAGFEKVDISLRSTAKILGTVCCVAGALTMALVKGQKLLHTEFLPSIHLTGSQGDDWLLGCLLLLASSVFWSCWMILQVPITSCCPDHLLSTFWMCLFSTIQAALFALLSESDLQAWILQSPLQISCSLYAGIGIAVSFFIQSWCISERGPLYCAMFNPLATVITALISATFLEEEVYVGSLVGAVGVIAGLYVVLWGKAKEFAEIKPEAPQSSNLLDDEISSRIDLEQPLLSEKLSEHATEADSKV*

>Glyma13g01570.2   sequence type=predicted peptide   gene model=Glyma13g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGLASNLPLIVMIGLQIHYAALAIFTRAALLDGLSTTVFVVYRQGIATLALAPIFFSPKRRQSVKDSLGFRSFFLMFVTALVGVTANQNAYFKGLFYASSTAATAMSNLIPALTFVIAAIAGFEKVDISLRSTAKILGTVCCVAGALTMALVKGQKLLHTEFLPSIHLTGSQGDDWLLGCLLLLASSVFWSCWMILQVPITSCCPDHLLSTFWMCLFSTIQAALFALLSESDLQAWILQSPLQISCSLYAGIGIAVSFFIQSWCISERGPLYCAMFNPLATVITALISATFLEEEVYVGR*

>Glyma13g01570.3   sequence type=predicted peptide   gene model=Glyma13g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNLIPALTFVIAAIAGFEKVDISLRSTAKILGTVCCVAGALTMALVKGQKLLHTEFLPSIHLTGSQGDDWLLGCLLLLASSVFWSCWMILQVPITSCCPDHLLSTFWMCLFSTIQAALFALLSESDLQAWILQSPLQISCSLYAGIGIAVSFFIQSWCISERGPLYCAMFNPLATVITALISATFLEEEVYVGSLVGAVGVIAGLYVVLWGKAKEFAEIKPEAPQSSNLLDDEISSRIDLEQPLLSEKLSEHATEADSKV*

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