SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57780 | AT | Annotation by Michelle Graham. TAIR10: EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:23405505-23406008 REVERSE LENGTH=167 | SoyBase | E_val: 9.00E-31 | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| UniRef100_D7MBW4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MBW4_ARALL | SoyBase | E_val: 3.00E-27 | ISS |
| UniRef100_I1LVW3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LVW3_SOYBN | SoyBase | E_val: 4.00E-140 | ISS |
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Glyma13g01530 not represented in the dataset |
Glyma13g01530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g07640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g091500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g01530.2 sequence type=transcript gene model=Glyma13g01530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTATGGTTTTGGGTAGTGGGCCAGGGACTCCATGTGCCAGCATGTGCTGTGTCTTTCTCTCAAAGCCCCACCACTCTCCTCTTTCGAGCACATAAATTCGTTACCTTCACATTCTTCCTCTTCTCAAGTACCCCTCTCTCTCTCTCTCACAGATCCTGATCATATGCCACTTTGCTTGGATCTGTAACACAGCAACGTCACTCATCAAACCTTACTCATATTAATTTTCTCTTTCTCCAACTTCAACACTCAAGAATTTCATAAAGAATGCGAAACATCAACTCAGTTAAGCAAGAATTCCTGAAGAAATGGATATGGGGTCTCAGAAAATACAGCTCTCAGAAGAAAAACATGAGTCTGATGGAGAGAAAGAAAGCCATAAAGCTGTCAGCAGATTTAGCCATGGCTTCCACCAGAAACAAATCCACTCGCTGGAGCAGGGCCCTTATTGCGAATGCTTCAAGAGATGGCAACAACAAAGTCCTCACGGAACACGTGTCACCATCATCATCATCACCACCACAGAGGCCGGCAACAAGGAAAAGCTTCAGAAGGATCAGAAGCTGCAGAAACATGTTGATCAGAAGAAACCGTGCAGCAGTCCACTGCAGAACAAAGGATAGGGTGGTGGCGGCGAGTTTCGTTGCGAAGAGGCTGGTCCAGAAGAGAACGCGAAGGCTCAAGAGTCTCTTACCAGGAGGAGAATCCATGGACGCTGTGTCTTTGGTTGAAGAAACCCTAGATTATATACAATCACTGCGAGCTCAAGTTGAAGTTATGAGACGTCTTGTCACTGCCTCAGAGATCATGATCCTAAATCCATCGTAAATATCCCAATAGATCAAATTTTAATCATTCCATAGCGTTTGATTAGCTTCTTTATAATATTATTATATGTTTTAAATATTTGTTAATTTTCTGGGTTTTTTTTTTTAATTTGCCCACTTCACATTTTTCTCTTTGCGAGATAGAAGGGGTGGAGAAAAAGAGGCGCTCCCATATATACGTTAAGGCATTGTACAGAGGTAAACATATATGTAAGTCAATCAAATTAAGGTTTTATTTTCATCACGCTCTCCTCGATTCATCGGAAGTTATATTGGTTAATTGGTTTCATATATGATGTATGTTAATTTGCCTGTTTATCTTTGATTCGACCACTTTTCTTTTTCTTTTATCATCGTAGATTACATGTGTCAATCGTTATGTGTATCATTAAACCTGTGAGAGGAAATTGACAATACATGATGTCAACCAAATTGTTTTACAATAAACAGCAAATTAAACAAGTTTGCTAATTATCTATATCTGATATGCTGAT >Glyma13g01530.3 sequence type=transcript gene model=Glyma13g01530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTATGGTTTTGGGTAGTGGGCCAGGGACTCCATGTGCCAGCATGTGCTGTGTCTTTCTCTCAAAGCCCCACCACTCTCCTCTTTCGAGCACATAAATTCGTTACCTTCACATTCTTCCTCTTCTCAAGTACCCCTCTCTCTCTCTCTCACAGATCCTGATCATATGCCACTTTGCTTGGATCTGTAACACAGCAACGTCACTCATCAAACCTTACTCATATTAATTTTCTCTTTCTCCAACTTCAACACTCAAGAATTTCATAAAGAATGCGAAACATCAACTCAGTTAAGCAAGAATTCCTGAAGAAATGGATATGGGGTCTCAGAAAATACAGCTCTCAGAAGAAAAACATGAGTCTGATGGAGAGAAAGAAAGCCATAAAGCTGTCAGCAGATTTAGCCATGGCTTCCACCAGAAACAAATCCACTCGCTGGAGCAGGGCCCTTATTGCGAATGCTTCAAGAGATGGCAACAACAAAGTCCTCACGGAACACGTGTCACCATCATCATCATCACCACCACAGAGGCCGGCAACAAGGAAAAGCTTCAGAAGGATCAGAAGCTGCAGAAACATGTTGATCAGAAGAAACCGTGCAGCAGTCCACTGCAGAACAAAGGATAGGGTGGTGGCGGCGAGTTTCGTTGCGAAGAGGCTGGTCCAGAAGAGAACGCGAAGGCTCAAGAGTCTCTTACCAGGAGGAGAATCCATGGACGCTGTGTCTTTGGTTGAAGAAACCCTAGATTATATACAATCACTGCGAGCTCAAGTTGAAGTTATGAGACGTCTTGTCACTGCCTCAGAGATCATGATCCTAAATCCATCGGGTGGAGAAAAAGAGGCGCTCCCATATATACGTTAAGGCATTGTACAGAGGTAAACATATATGTAAGTCAATCAAATTAAGGTTTTATTTTCATCACGCTCTCCTCGATTCATCGGAAGTTATATTGGTTAATTGGTTTCATATATGATGTATGTTAATTTGCCTGTTTATCTTTGATTCGACCACTTTTCTTTTTCTTTTATCATCGTAGATTACATGTGTCAATCGTTATGTGTATCATTAAACCTGTGAGAGGAAATTGACAATACATGATGTCAACCAAATTGTTTTACAATAAACAGCAAATTAAACAAGTTTGCTAATTATCTATATCTGATATGCTGAT
>Glyma13g01530.1 sequence type=CDS gene model=Glyma13g01530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAAACATCAACTCAGTTAAGCAAGAATTCCTGAAGAAATGGATATGGGGTCTCAGAAAATACAGCTCTCAGAAGAAAAACATGAGTCTGATGGAGAGAAAGAAAGCCATAAAGCTGTCAGCAGATTTAGCCATGGCTTCCACCAGAAACAAATCCACTCGCTGGAGCAGGGCCCTTATTGCGAATGCTTCAAGAGATGGCAACAACAAAGTCCTCACGGAACACGTGTCACCATCATCATCATCACCACCACAGAGGCCGGCAACAAGGAAAAGCTTCAGAAGGATCAGAAGCTGCAGAAACATGTTGATCAGAAGAAACCGTGCAGCAGTCCACTGCAGAACAAAGGATAGGGTGGTGGCGGCGAGTTTCGTTGCGAAGAGGCTGGTCCAGAAGAGAACGCGAAGGCTCAAGAGTCTCTTACCAGGAGGAGAATCCATGGACGCTGTGTCTTTGGTTGAAGAAACCCTAGATTATATACAATCACTGCGAGCTCAAGTTGAAGTTATGAGACGTCTTGTCACTGCCTCAGAGATCATGATCCTAAATCCATCAAGGGGTGGAGAAAAAGAGGCGCTCCCATATATACGTTAA >Glyma13g01530.2 sequence type=CDS gene model=Glyma13g01530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAAACATCAACTCAGTTAAGCAAGAATTCCTGAAGAAATGGATATGGGGTCTCAGAAAATACAGCTCTCAGAAGAAAAACATGAGTCTGATGGAGAGAAAGAAAGCCATAAAGCTGTCAGCAGATTTAGCCATGGCTTCCACCAGAAACAAATCCACTCGCTGGAGCAGGGCCCTTATTGCGAATGCTTCAAGAGATGGCAACAACAAAGTCCTCACGGAACACGTGTCACCATCATCATCATCACCACCACAGAGGCCGGCAACAAGGAAAAGCTTCAGAAGGATCAGAAGCTGCAGAAACATGTTGATCAGAAGAAACCGTGCAGCAGTCCACTGCAGAACAAAGGATAGGGTGGTGGCGGCGAGTTTCGTTGCGAAGAGGCTGGTCCAGAAGAGAACGCGAAGGCTCAAGAGTCTCTTACCAGGAGGAGAATCCATGGACGCTGTGTCTTTGGTTGAAGAAACCCTAGATTATATACAATCACTGCGAGCTCAAGTTGAAGTTATGAGACGTCTTGTCACTGCCTCAGAGATCATGATCCTAAATCCATCGTAA >Glyma13g01530.3 sequence type=CDS gene model=Glyma13g01530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAAACATCAACTCAGTTAAGCAAGAATTCCTGAAGAAATGGATATGGGGTCTCAGAAAATACAGCTCTCAGAAGAAAAACATGAGTCTGATGGAGAGAAAGAAAGCCATAAAGCTGTCAGCAGATTTAGCCATGGCTTCCACCAGAAACAAATCCACTCGCTGGAGCAGGGCCCTTATTGCGAATGCTTCAAGAGATGGCAACAACAAAGTCCTCACGGAACACGTGTCACCATCATCATCATCACCACCACAGAGGCCGGCAACAAGGAAAAGCTTCAGAAGGATCAGAAGCTGCAGAAACATGTTGATCAGAAGAAACCGTGCAGCAGTCCACTGCAGAACAAAGGATAGGGTGGTGGCGGCGAGTTTCGTTGCGAAGAGGCTGGTCCAGAAGAGAACGCGAAGGCTCAAGAGTCTCTTACCAGGAGGAGAATCCATGGACGCTGTGTCTTTGGTTGAAGAAACCCTAGATTATATACAATCACTGCGAGCTCAAGTTGAAGTTATGAGACGTCTTGTCACTGCCTCAGAGATCATGATCCTAAATCCATCGGGTGGAGAAAAAGAGGCGCTCCCATATATACGTTAA
>Glyma13g01530.1 sequence type=predicted peptide gene model=Glyma13g01530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNINSVKQEFLKKWIWGLRKYSSQKKNMSLMERKKAIKLSADLAMASTRNKSTRWSRALIANASRDGNNKVLTEHVSPSSSSPPQRPATRKSFRRIRSCRNMLIRRNRAAVHCRTKDRVVAASFVAKRLVQKRTRRLKSLLPGGESMDAVSLVEETLDYIQSLRAQVEVMRRLVTASEIMILNPSRGGEKEALPYIR* >Glyma13g01530.2 sequence type=predicted peptide gene model=Glyma13g01530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNINSVKQEFLKKWIWGLRKYSSQKKNMSLMERKKAIKLSADLAMASTRNKSTRWSRALIANASRDGNNKVLTEHVSPSSSSPPQRPATRKSFRRIRSCRNMLIRRNRAAVHCRTKDRVVAASFVAKRLVQKRTRRLKSLLPGGESMDAVSLVEETLDYIQSLRAQVEVMRRLVTASEIMILNPS* >Glyma13g01530.3 sequence type=predicted peptide gene model=Glyma13g01530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRNINSVKQEFLKKWIWGLRKYSSQKKNMSLMERKKAIKLSADLAMASTRNKSTRWSRALIANASRDGNNKVLTEHVSPSSSSPPQRPATRKSFRRIRSCRNMLIRRNRAAVHCRTKDRVVAASFVAKRLVQKRTRRLKSLLPGGESMDAVSLVEETLDYIQSLRAQVEVMRRLVTASEIMILNPSGGEKEALPYIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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