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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma13g01500

Feature Type:gene_model
Chromosome:Gm13
Start:1208279
stop:1211532
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14850AT Annotation by Michelle Graham. TAIR10: Alg9-like mannosyltransferase family | chr5:4802099-4804977 REVERSE LENGTH=548 SoyBaseE_val: 0ISS
GO:0006505GO-bp Annotation by Michelle Graham. GO Biological Process: GPI anchor metabolic process SoyBaseN/AISS
GO:0006506GO-bp Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005789GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane SoyBaseN/AISS
GO:0031227GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane SoyBaseN/AISS
GO:0000030GO-mf Annotation by Michelle Graham. GO Molecular Function: mannosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
KOG1771 KOG GPI-alpha-mannosyltransferase III (GPI10/PIG-B) involved in glycosylphosphatidylinositol anchor biosynthesis JGI ISS
PTHR22760Panther GLYCOSYLTRANSFERASE JGI ISS
PF03901PFAM Alg9-like mannosyltransferase family JGI ISS
UniRef100_G7JEC3UniRef Annotation by Michelle Graham. Most informative UniRef hit: GPI mannosyltransferase n=1 Tax=Medicago truncatula RepID=G7JEC3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LVW1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVW1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g01500 not represented in the dataset

Glyma13g01500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma17g07620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g091700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g01500.1   sequence type=CDS   gene model=Glyma13g01500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGAAGACACAACAGTGACAAATATGCAGACAAAGAAGAATCCCAAGCTCCAACTTCATCCAAATCAGATTCAGACCACACATCATTCCTTTGTTCACAAAAACGAGTCTTCGCTCTCTGCTTGGCATTCCGAATGGTGAATTCCGTTTTGGTGCAGACTTATTTCAACCCCGATGAACACTGGCAAGGCCCCGAGATCGCGCATCGCATCGCTTTTGGGTACGGTCACTTAACCTGGGAGTGGAAACAAGGTATCCGAAGCTACTTGCACCCCATCATCTTCGTTCCGCTTTATAGGCTCCTTGCCTTACTGCATCTTGATACCCCATGGCTTATGATGAGGGCTCCACGGCTACTGCAGTCTGTATTCTCTGCAGTTGGTGATTTATACTTGTACAAGCTTGCTGCGGTTCTCTTTGGTGATTCTGTTGCAAAATGGACACTCTTTTCGCAATTGTCCAATTGGTTTATGTTTTATTGTTTTTCTCGAACGCTGTCGAATAGCTTGGAGACTGTTCTTACACTAGTGTCCCTATACTTTTGGCCCTGCATGAGACCTTCCAGCAACTGTTCCTTTGTTTCAAGGAAGTGGGGCTTAGCTGTGGCAGCGGTGGCTTGTGCTATCCGACCAACAAGTGCAATCACATGGCTGTATGTTGGCCTGCTTGAGCTTTTCAAGGCACATGACAGATTCAAATTCATTTTTTTGGAGGTGGCTCCTATTGGGATCCTGGTGCTTGGACTTACCTGCTTATTAGATCGTTTCATGTATGGCACATGGATTCTAGTACCACTTAATTTTTTAAAATTCAATTTTCTTTCTGCGGGAGGAGATTATTATGGAACTCACAAGTGGCACTGGTACTTCACTCAGGGATTTCCAGTCATGATCTTCTCTCACTTACCATTTTGTATAGCTGGTATCATTTATTCCAAACAATGGAAGTTTTCTGGCCTTCTTGCATGGGTTTTGGGTTTCTACAGTTTATTAGGCCACAAGGAATTCAGGTTTGCCTTGCCAGTTCTTCCCATAGCTCTGATGTTTTCTGGTTATTCTTTGGCTGTGATAGAAGATCCCGGTTATGCACAGAATAAAGGAAAAAAATCTATAAAAAAGCATACGAGATTTCCTCCCAATATGGGAGCTGCTATCTTATTTTTGCTTGCTACCAATATTCCAATGGCTTTGTACATGAGTTTGGTTCATCAGAGAGGACCCGAGGATGCCATGAACCACCTTGCTAGGGAAGCTCTTCATGGGAAAGTGAAAAGCATTCTATTCCTAACGCCTTGCCATGCCACTCCCTACTATTCGATGCTGCATCATAACCTGCCAATGCAATTTCTCGATTGCACACCAAGTGAAGAGAAAGGAGTTCCTGATGAGTCTGACCGTTTCTTGATGGACCCTATTCCTTTTGTGTCTGAATATGCAAAAAACAAGTCTCTGCCCAGCCACGTTGTTTTATTTGATTCTGAAGAACAAAAATTGAAGAACCTTTTAATTTCACTTGATTATAAAGAGGAAAAAAGATTTTTTAATGCTCACTTCAAGGTTGATCGTGATCTTCAAGGTTCAATTGTTGTATACGTGCGAATAAGATAG

>Glyma13g01500.1   sequence type=predicted peptide   gene model=Glyma13g01500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRRHNSDKYADKEESQAPTSSKSDSDHTSFLCSQKRVFALCLAFRMVNSVLVQTYFNPDEHWQGPEIAHRIAFGYGHLTWEWKQGIRSYLHPIIFVPLYRLLALLHLDTPWLMMRAPRLLQSVFSAVGDLYLYKLAAVLFGDSVAKWTLFSQLSNWFMFYCFSRTLSNSLETVLTLVSLYFWPCMRPSSNCSFVSRKWGLAVAAVACAIRPTSAITWLYVGLLELFKAHDRFKFIFLEVAPIGILVLGLTCLLDRFMYGTWILVPLNFLKFNFLSAGGDYYGTHKWHWYFTQGFPVMIFSHLPFCIAGIIYSKQWKFSGLLAWVLGFYSLLGHKEFRFALPVLPIALMFSGYSLAVIEDPGYAQNKGKKSIKKHTRFPPNMGAAILFLLATNIPMALYMSLVHQRGPEDAMNHLAREALHGKVKSILFLTPCHATPYYSMLHHNLPMQFLDCTPSEEKGVPDESDRFLMDPIPFVSEYAKNKSLPSHVVLFDSEEQKLKNLLISLDYKEEKRFFNAHFKVDRDLQGSIVVYVRIR*







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