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Report for Sequence Feature Glyma13g01480

Feature Type:gene_model
Chromosome:Gm13
Start:1191808
stop:1198547
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g01480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57740AT Annotation by Michelle Graham. TAIR10: XB3 ortholog 2 in Arabidopsis thaliana | chr5:23394789-23397145 REVERSE LENGTH=508 SoyBaseE_val: 0ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0010311GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root formation SoyBaseN/AISS
GO:0010366GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene biosynthetic process SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0051865GO-bp Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG4412 KOG 26S proteasome regulatory complex, subunit PSMD10 JGI ISS
PTHR24128Panther FAMILY NOT NAMED JGI ISS
PTHR24128:SF158Panther JGI ISS
PF00023PFAM Ankyrin repeat JGI ISS
UniRef100_G7JEC0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat-rich protein n=1 Tax=Medicago truncatula RepID=G7JEC0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LVV7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVV7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g01480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g01480
ParalogEvidenceComments
Glyma17g07600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g01480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g091900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g01480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g01480
>Glyma13g01480.1   sequence type=CDS   gene model=Glyma13g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTTCTGAGCCTGGTGGGGAATTCTTTTGGATGTTCTGCATCTGGTGAGCGCTTAGTTTCTGCAGCCAGAGATGGGGATGTTCAAGAAGCCAAGGCCTTATTGGAATATAACCCTCGTCTTGCAAGGTATTCCACTTTCGGAGTTCGCAATTCCCCTTTGCATTATTCTGCAGCTCATGGCCACCATGAGATAGTGTATCTGTTACTTGAGTCCGGAGTTGATATCAATCTCAGGAATTATCGCGGTCAGACTGCATTGATGCAAGCTTGTCAACATGGTCACTGGGAGGTGGTTCAGACCCTGGTTATTTTTAATGCCAATATCCATAAAGCTGATTACCTAAATGGAGGTACTGCCCTTCACTTGGCTGCTTTGAATGGCCATACCCGGTGCATTCGGCTCATCCTCGCTGACTATATACCTAGCGTCCCTAACTTTTGGAATGCATTACAGACAGGTGATCATAAATCAATCTCAGAATTTGATCAAAGTGGTCTCTGCGAGGTGATTAACAGAACTGCTGATGGAGGCATCACTGCTCTGCATATGGCAGCATTAAATGGGCATGTTGAAAGTGTACAGTTACTCTTGGACTTGGGAGCTTCTGTGTCCGAGGTTACTGTGGAGGATGGAACTACCATTGACTTAATTGGTTCTGGAAGCACTCCACTCCATTATGCTGCATGTGGTGGAAATCAACAATGTTGTCAACTGTTGATTGCCAAGGGTGCCAATCTGACTGCTGAGAATGCAAATGGATGGACCCCCTTGATGGTTGCTCGTTCTTGGCATAGAGACTGGCTTGAGGACATCTTAAAAACACCTCCAGCAGACCCCTTACAAGTTCTTCCTTCTCCATATATATCTCTTCCACTTATGAGCATTGTGCGAATTGCTAGAGAATGTGGATGGAGGACAAATGATTTAGCACCATGCTTAGATCCATGCGCTGTTTGTTTGGAAAGGAAATGTACGGTCGCTGTAGAAGGTTGTGATCACGAGTTCTGCACACAATGTGCCTTGTATCTTTGTTCTACAAACTCTACTTCAACAACCACAACAGGACCCCCAGGTTCAATTGCATGCCCTCTCTGCAGGCACGGCATAGTCTCATTTGTGAAGCTTCCAGACGCAAGACCACTACACAAGGAAATGCAAAGGACATCAAACTTGTCCCTAACATTTTGCACATGTTCAAGTGAGGTATTAGGGGATTCCAGTGACATGACCACCCCATTTTGCAAACCAACTTCCCGTGGATCCAAAAATTCTTCCCCTTCAAGATCATTTCGCTCCATTAGCTGCCAAGGGTTCCCCTCATTCAGAATGAACCCCAGCCTTTGCTTGGGAGCAGATGTTAGCCCCTCCTTAGTGCCTTGCACTGTGGGCAGAAACGTGAGGAACCACTTGGCAAGGTGTTCTGGTTCCAGTTTCAGACGATCATCTTCTCAAACAGAAAGAAGGAAGTCATCATGGTTTTGTTCCCTCAATCAATCTGTTGACACAGGCAGTGGATGCTGA
Predicted protein sequences of Glyma13g01480
>Glyma13g01480.1   sequence type=predicted peptide   gene model=Glyma13g01480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFLSLVGNSFGCSASGERLVSAARDGDVQEAKALLEYNPRLARYSTFGVRNSPLHYSAAHGHHEIVYLLLESGVDINLRNYRGQTALMQACQHGHWEVVQTLVIFNANIHKADYLNGGTALHLAALNGHTRCIRLILADYIPSVPNFWNALQTGDHKSISEFDQSGLCEVINRTADGGITALHMAALNGHVESVQLLLDLGASVSEVTVEDGTTIDLIGSGSTPLHYAACGGNQQCCQLLIAKGANLTAENANGWTPLMVARSWHRDWLEDILKTPPADPLQVLPSPYISLPLMSIVRIARECGWRTNDLAPCLDPCAVCLERKCTVAVEGCDHEFCTQCALYLCSTNSTSTTTTGPPGSIACPLCRHGIVSFVKLPDARPLHKEMQRTSNLSLTFCTCSSEVLGDSSDMTTPFCKPTSRGSKNSSPSRSFRSISCQGFPSFRMNPSLCLGADVSPSLVPCTVGRNVRNHLARCSGSSFRRSSSQTERRKSSWFCSLNQSVDTGSGC*






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