SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30400 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr4:14867068-14868486 FORWARD LENGTH=472 | SoyBase | E_val: 2.00E-112 | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR14155 | Panther | RING FINGER PROTEIN 6/12/38 | JGI | ISS | |
| PTHR14155:SF26 | Panther | OS08G0445000 PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7JEB6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7JEB6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LVV6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVV6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g01470 not represented in the dataset |
Glyma13g01470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g07590 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g092000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g01470.2 sequence type=transcript gene model=Glyma13g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAACAAGAAGCAACCGCTAGTTATGCCGGAGGGTGATTTTTTGTTCAAAGGTCCAAGCTAATCTCATTAAATTTCACACGGTGACAGATTTGTGTGTCATTATCATTCAAAAATTGTTCATCAAGACTTGCAAGTTGCAAATCACTATAATATTCTTCGTTGAGCACCCCCTTTAAAATCCCTGCTCCAAGGAAGGAACTCATCGTCCCACTCCCACCTCATCTTTTTTGACTTCCAGACTCAAATCTAAAGCCAAAAAAAACAAAACAAACATTTGTCTCCATCAAAAAGCACTGCCCTTACGTGGTGCCTTCCCCTGCCACTTTTTTTCTTTAGCATCCAACCGGAAAAAAAAAATAGTACTCTCACAGTCTCACCTCACTTGCCCCCTTTTGTCTATGGCACAAGATGGTGTCTTAAAACTGTGTGATCCTATTTGCACTTGAAAAAAGTTGCAACCTTTTTGTTGTGAGTTTTCTCTGACTCAGCAACATGGGTTTTAGGAGTGATGTTTTTGTGTCTCCACCAGAACAGCCACCATATTTTCTCTCAGAGCCTACCCCACCTTTCCCACCAACTGTTCGATCTGATAGTTTCAGTTTCAACGATAGGGCCTTGAAGATTCCTGTGGAGACCCCAAACTAGAGAGCCTGATGAATTGGACAATGTCACTGCTCTCCAAGGCCAATTGCAGCAACTCTTCCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACCCTCCCTGTGTTCCTCTACAAGGCCATCATAGGACTCAAGAAGTACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTCAGGTTGCTGCCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCACCTTGCTCCCTGAATTCTCTGCAAGCAACGCATGTTCTCCTATTGTTCTTGTCCTTGAATCTGGGAGTAGTGAGAGCTCCAGGGAGATTGTTCCTGAAAGAGAGCCTGCTGCTGCTGCTGTTGGAAGGACTAGTTCGGTTATCACCGCAAATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTGTTTAGTGAAATTCCTGATCCAACAGTGCAAAATGGTGTGGAAAAGGTTGTTACTGTTAAGCTGGGGAAGTTCAGAAGTGTGGATGGTGGAGGTGGAGGTGGAGATGGAGGTGGGGAAGGGACTAGTAGTATCAACAATGTGGATGCTAGAAGGTGTTTTTCTATGGGTTCTTTTGCTTATGTTATGGATGAGAGTTCTTCATTGCAAGTACCTATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATAGTTGAGGATGATGCTGCTAGTACTGGGGCTACAACTGCAAGCACAACTTGTAATGGGAACAGTGCTGCTGCCATCGGAAGGAGCAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATGCTGGGGCAGATTCATCTAGAAGGGCTGTTTCGTTTCGATTCCCGGTGAAATCTAGTGTTGTTGCTGCTGCTTCTGGTAGTGCTGATGATGATGATTTGAAGGGCAAGAATTGCAAGTTTGATACAAGGAGTACTATGTCTGAGATGGATATTGGAAAGTGGGAGAATGGAAGAGGGACTGAGTTCGATTATGATGAAGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAGTTTCTCTCTTTACCTCTTTGTTTATTTTTGGAACCATTTTTTGCTTCCTTTATCTAAAATTCTGGAATCTAAATTTGTTTAAAATAGAATGTTAGTGGTAGAAAGGTGCAAGAGAGATTGAAAAGTGAGATGAGTTGGGAAATCTGAATACAGTGTTTCTGCTTTGAGTTTGTTGCTGTTCCATTGAATCTGAGTCCACCTCCGTTGAGGGTAAAAAAATGTAGAAGAAAGATTCTTTTGTTTCCCCACCGGTGATTTCTCAGTCAAACATTTACATTTCAGTTTTCACTTGATACTGCAATCTTGTAATATTTTGTAAATTTTCTCCGATTTTCTTAAATCTTATGACCTGCAGATACGTTCTTGCAATAATGTGAAGAAATCCTTCAAACTAAAATTGCTT
>Glyma13g01470.1 sequence type=CDS gene model=Glyma13g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTTTAGGAGTGATGTTTTTGTGTCTCCACCAGAACAGCCACCATATTTTCTCTCAGAGCCTACCCCACCTTTCCCACCAACTGTTCGATCTGATAGTTTCAGTTTCAACGATAGGGCCTTGAAGGTTAGTCCAAGCATCCTTCTGATCATCATAATTCTGGCCATTGTTTTCTTCATTTCTGGTTTGCTGCACCTTCTGGTTAGATTCCTGTGGAGACCCCAAACTAGAGAGCCTGATGAATTGGACAATGTCACTGCTCTCCAAGGCCAATTGCAGCAACTCTTCCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACCCTCCCTGTGTTCCTCTACAAGGCCATCATAGGACTCAAGAAGTACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTCAGGTTGCTGCCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCACCTTGCTCCCTGAATTCTCTGCAAGCAACGCATGTTCTCCTATTGTTCTTGTCCTTGAATCTGGGAGTAGTGAGAGCTCCAGGGAGATTGTTCCTGAAAGAGAGCCTGCTGCTGCTGCTGTTGGAAGGACTAGTTCGGTTATCACCGCAAATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTGTTTAGTGAAATTCCTGATCCAACAGTGCAAAATGGTGTGGAAAAGGTTGTTACTGTTAAGCTGGGGAAGTTCAGAAGTGTGGATGGTGGAGGTGGAGGTGGAGATGGAGGTGGGGAAGGGACTAGTAGTATCAACAATGTGGATGCTAGAAGGTGTTTTTCTATGGGTTCTTTTGCTTATGTTATGGATGAGAGTTCTTCATTGCAAGTACCTATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATAGTTGAGGATGATGCTGCTAGTACTGGGGCTACAACTGCAAGCACAACTTGTAATGGGAACAGTGCTGCTGCCATCGGAAGGAGCAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATGCTGGGGCAGATTCATCTAGAAGGGCTGTTTCGTTTCGATTCCCGGTGAAATCTAGTGTTGTTGCTGCTGCTTCTGGTAGTGCTGATGATGATGATTTGAAGGGCAAGAATTGCAAGTTTGATACAAGGAGTACTATGTCTGAGATGGATATTGGAAAGTGGGAGAATGGAAGAGGGACTGAGTTCGATTATGATGAAGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG >Glyma13g01470.2 sequence type=CDS gene model=Glyma13g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCACCTTGCTCCCTGAATTCTCTGCAAGCAACGCATGTTCTCCTATTGTTCTTGTCCTTGAATCTGGGAGTAGTGAGAGCTCCAGGGAGATTGTTCCTGAAAGAGAGCCTGCTGCTGCTGCTGTTGGAAGGACTAGTTCGGTTATCACCGCAAATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTGTTTAGTGAAATTCCTGATCCAACAGTGCAAAATGGTGTGGAAAAGGTTGTTACTGTTAAGCTGGGGAAGTTCAGAAGTGTGGATGGTGGAGGTGGAGGTGGAGATGGAGGTGGGGAAGGGACTAGTAGTATCAACAATGTGGATGCTAGAAGGTGTTTTTCTATGGGTTCTTTTGCTTATGTTATGGATGAGAGTTCTTCATTGCAAGTACCTATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATAGTTGAGGATGATGCTGCTAGTACTGGGGCTACAACTGCAAGCACAACTTGTAATGGGAACAGTGCTGCTGCCATCGGAAGGAGCAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATGCTGGGGCAGATTCATCTAGAAGGGCTGTTTCGTTTCGATTCCCGGTGAAATCTAGTGTTGTTGCTGCTGCTTCTGGTAGTGCTGATGATGATGATTTGAAGGGCAAGAATTGCAAGTTTGATACAAGGAGTACTATGTCTGAGATGGATATTGGAAAGTGGGAGAATGGAAGAGGGACTGAGTTCGATTATGATGAAGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG
>Glyma13g01470.1 sequence type=predicted peptide gene model=Glyma13g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFRSDVFVSPPEQPPYFLSEPTPPFPPTVRSDSFSFNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDELDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKKYPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRATLLPEFSASNACSPIVLVLESGSSESSREIVPEREPAAAAVGRTSSVITANSRLGCRGDSEFGSTRVDLKSGELFSEIPDPTVQNGVEKVVTVKLGKFRSVDGGGGGGDGGGEGTSSINNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATTIVEDDAASTGATTASTTCNGNSAAAIGRSRKESFSISKIWLRGKKDKPNAGADSSRRAVSFRFPVKSSVVAAASGSADDDDLKGKNCKFDTRSTMSEMDIGKWENGRGTEFDYDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL* >Glyma13g01470.2 sequence type=predicted peptide gene model=Glyma13g01470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MECIDTWLLSHSTCPLCRATLLPEFSASNACSPIVLVLESGSSESSREIVPEREPAAAAVGRTSSVITANSRLGCRGDSEFGSTRVDLKSGELFSEIPDPTVQNGVEKVVTVKLGKFRSVDGGGGGGDGGGEGTSSINNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATTIVEDDAASTGATTASTTCNGNSAAAIGRSRKESFSISKIWLRGKKDKPNAGADSSRRAVSFRFPVKSSVVAAASGSADDDDLKGKNCKFDTRSTMSEMDIGKWENGRGTEFDYDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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