Report for Sequence Feature Glyma13g01330
Feature Type: gene_model
Chromosome: Gm13
Start: 1020002
stop: 1022202
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g01330
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G29110 AT
Annotation by Michelle Graham. TAIR10: glutamate receptor 2.8 | chr2:12506880-12510552 REVERSE LENGTH=947
SoyBase E_val: 2.00E-82 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0006874 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis
SoyBase N/A ISS
GO:0009416 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to light stimulus
SoyBase N/A ISS
GO:0030003 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0004970 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ionotropic glutamate receptor activity
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0005217 GO-mf
Annotation by Michelle Graham. GO Molecular Function: intracellular ligand-gated ion channel activity
SoyBase N/A ISS
GO:0005234 GO-mf
Annotation by Michelle Graham. GO Molecular Function: extracellular-glutamate-gated ion channel activity
SoyBase N/A ISS
PTHR18966 Panther
IONOTROPIC GLUTAMATE RECEPTOR-RELATED
JGI ISS
PTHR18966:SF6 Panther
gb def: agcp9714 [anopheles gambiae str. pest]
JGI ISS
PF00060 PFAM
Ligand-gated ion channel
JGI ISS
PF00497 PFAM
Bacterial extracellular solute-binding proteins, family 3
JGI ISS
UniRef100_B9IM39 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glutamate receptor n=1 Tax=Populus trichocarpa RepID=B9IM39_POPTR
SoyBase E_val: 1.00E-108 ISS
UniRef100_C6TEI9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TEI9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g01330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g01330
Paralog Evidence Comments
Glyma17g07470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g01330 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g093300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g01330
Coding sequences of Glyma13g01330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g01330.2 sequence type=CDS gene model=Glyma13g01330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTAAGTGTTTCTCATCCCTTCTCTCTTGGTTTCTGATTTTTTTGTTTGTGCTGCTACACACACAAACGGGGTATGGTTCAAATGCAACATCAAAGTCGGAAGCGATCATCAACTTGAGAGTAGGGGTACCCCTGAAAAATGGTTTCCCCCAATTTGTGAATGTAGTTTGGGACTCTCATGAAAAGAAGTACAACGTATCTGGATATTGCATAGACGTTTTCTATGCCGTTGTAAACATTTTACCTTTCAAGGTTTCTCTAGATATTCAACCTTTTGAGGTTGAATCACGTGACAATTCTGGAGCTGGATCATACGATTCACTTCTCCAACAAATCCCAGCAAAGTACGATGTTGTGGTAGGGGATATAACAATCCTGGCCAACCGTTCAAACATGGTAGATTTCACACTGCCATATACAGGATCTGGATTTAAAATGCTAGTAACAGTTCAACATGGGAGGCAACAAACCATGTGGATTTTTGTGAAACCCTTCAGCTGGGATCTTTGGTTGAGCATAGTCATCATCTCTACCTTCATAGGGGTCTCCATACTCGTCATGGAAAGAAATGTAAATGCTCCTACTGATCAGGAGGGTTTGCCAAATCGAAAAAAGCTTAGCCCTGCGACAATCTTATGGTTTCCAATTTCACAAGCAATTCTTCCTGAAAGACAAGTAGTGGCCAAGAACTGCTCGAGATTTGTGTTAATGATATGGCTTCTATTGGCGTTCGTGCTCATGCAAAGTTACACTGCAAACTTGACTTCTATATTGACTTTGGATCAGTTAGGACCCAGTTTTTTTAATGTAAATGATCTAAGAAAAGGTGGTTATTATGTTGGATATCAATCTGGGTCTTTCGTTAAAGATGTGTTGGTTCAGCAATTTAAGTTTGATACGTCCAAGCTGAGGCCATATAGCAACAGTGCTGAGTATCATAATGCTTTAAAAACTGGAAGCCAACGTGGTGGTGTTGCAGCTATATTCGATGAAGTGCCTTACCTTAAAGTCTTCCTTCAAGAATACGGATCCAATTACATCATGGCCGGCTCGAGATATAGAAATGATGGCTTTGGTTTTGCATTCCCTTTAAACTCCAATCTCACCACTCACTTTTCGAGAGCCATCTTGAAGGTGACTGAGAGTGAGTTAATGAATGAAATTGAGAGAAAATATTTTGGGAAGAAGGATATTGAAGAAGACTCGTCTGCGGAAATTTCTTCCGCTGCTCCAAGCCTCAACTTTCATAGCTTTGCAGGGCTATTCTTGATTACAGGGATTAGTACTTTATTAGCACTAATGGTCTCAGAAACTGTTATTTGGCGAAGGGTCATTTTGATGGCTAAAGCAATCAGCCAGAGGTATTTGTTCGCCACTCCACCTCCCACCGAAACACGCGTTCATCCAATTCATGATGATTCAATTCGCGGAATAGAGGCCATTTAA
Predicted protein sequences of Glyma13g01330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g01330.2 sequence type=predicted peptide gene model=Glyma13g01330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAKCFSSLLSWFLIFLFVLLHTQTGYGSNATSKSEAIINLRVGVPLKNGFPQFVNVVWDSHEKKYNVSGYCIDVFYAVVNILPFKVSLDIQPFEVESRDNSGAGSYDSLLQQIPAKYDVVVGDITILANRSNMVDFTLPYTGSGFKMLVTVQHGRQQTMWIFVKPFSWDLWLSIVIISTFIGVSILVMERNVNAPTDQEGLPNRKKLSPATILWFPISQAILPERQVVAKNCSRFVLMIWLLLAFVLMQSYTANLTSILTLDQLGPSFFNVNDLRKGGYYVGYQSGSFVKDVLVQQFKFDTSKLRPYSNSAEYHNALKTGSQRGGVAAIFDEVPYLKVFLQEYGSNYIMAGSRYRNDGFGFAFPLNSNLTTHFSRAILKVTESELMNEIERKYFGKKDIEEDSSAEISSAAPSLNFHSFAGLFLITGISTLLALMVSETVIWRRVILMAKAISQRYLFATPPPTETRVHPIHDDSIRGIEAI*