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Report for Sequence Feature Glyma13g01290

Feature Type:gene_model
Chromosome:Gm13
Start:959517
stop:961497
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57660AT Annotation by Michelle Graham. TAIR10: CONSTANS-like 5 | chr5:23355573-23356729 FORWARD LENGTH=355 SoyBaseE_val: 4.00E-123ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0042631GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1601 KOG GATA-4/5/6 transcription factors JGI ISS
PF00643PFAM B-box zinc finger JGI ISS
PF06203PFAM CCT motif JGI ISS
UniRef100_D0EP05UniRef Annotation by Michelle Graham. Most informative UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP05_SOYBN SoyBaseE_val: 0ISS
UniRef100_D0EP05UniRef Annotation by Michelle Graham. Best UniRef hit: CONSTANS-like zinc finger protein n=1 Tax=Glycine max RepID=D0EP05_SOYBN SoyBaseE_val: 0ISS

LocusGene SymbolProtein Name
COL4a Constans-like 4a

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma17g07420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g093800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma13g01290.1   sequence type=CDS   gene model=Glyma13g01290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAATTGAAAGAGGAGGCTTGAAGGGATTCAGGAGCGGCTGGAGTGTGCCGCCGAAGAAGCCATGCGACTCCTGTAAGCTGGCTTCGGCGGCGCTTTTCTGCCACCTCGATTCCGCGTTTCTCTGCATCGCGTGCGATTCCAAGATTCACTGCGCGAATAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTTCTGTCACGTGCAAGGCTGACGCGGCCGCCCTTTGCGTCACGTGCGACTCCGACATCCACTCCGCCAACCCACTCGCGCAACGCCACGAGCGCGTTCCCGTGGAGCCCTTCTTCGATTCCGCGGAATCCATCGTCAAAGCCTCCGCCACCGCCTCTTTCGGGTTCGTCGTCCCCTCCGACGATGGCGCTGCCTCCGACGTCTTCGCCCCCGACGACTCCGACTCCGCCGCCTGGCTCATCCCGAACCCCAATTTCGGGTCCAAACTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACCACAACAGCGCCGTAAACGACAGTGTCGTTCCAGTTCAAACCAAACCCTCTCTCGCCCCTCCCCCCATCAACAATCACCAGCACCACCACCAATCTGAGACTTGCTTCGACATCGATTTTTGCCGCTCGAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCTTCGTCGTCGCTTGATGTCGGAGTGGTGCCGGACGGGAACACAGTGTCGGACATGTCGTATTCGAGTGGGATTGTGGTGTCGGGTGGACAAGGCGCGACGCAGTTGTGTGGGATGGATCGGGAAGCGAGGGTGCTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTTGAGAAGACGATTCGATACGCATCGCGAAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGCCGGTTCGCGAAACGAACCGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCGCTGCGGCGCTCATGCTGGACACTCCATACGGTGTCGTACCAACGTTTTAG

>Glyma13g01290.1   sequence type=predicted peptide   gene model=Glyma13g01290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIERGGLKGFRSGWSVPPKKPCDSCKLASAALFCHLDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASATASFGFVVPSDDGAASDVFAPDDSDSAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNHNSAVNDSVVPVQTKPSLAPPPINNHQHHHQSETCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSSGIVVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGAAALMLDTPYGVVPTF*







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