Glyma13g01180 - SoyBase

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Report for Sequence Feature Glyma13g01180

Feature Type:	gene_model
Chromosome:	Gm13
Start:	884539
stop:	893165
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g01180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30310	AT	Annotation by Michelle Graham. TAIR10: FGGY family of carbohydrate kinase \| chr4:14831913-14835092 FORWARD LENGTH=579	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
GO:0019200	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate kinase activity	SoyBase	N/A	ISS
KOG2517	KOG	Ribulose kinase and related carbohydrate kinases	JGI		ISS
PTHR10196	Panther	XYLULOSE KINASE	JGI		ISS
PTHR10196:SF8	Panther	XYLULOSE KINASE	JGI		ISS
PF00370	PFAM	FGGY family of carbohydrate kinases, N-terminal domain	JGI		ISS
PF02782	PFAM	FGGY family of carbohydrate kinases, C-terminal domain	JGI		ISS
UniRef100_G7JD18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: FGGY carbohydrate kinase domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JD18_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B675	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B675 related cluster n=1 Tax=unknown RepID=UPI000233B675	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g01180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g01180

Paralog	Evidence	Comments
Glyma17g07310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g01180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g094600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g01180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g01180

Limit To All Plant Sequences

>Glyma13g01180.3   sequence type=transcript   gene model=Glyma13g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTTTAAATTTCAGATCGATGCTTTTCATATATGAAAAAACACTTTTTCCTAGGAAACGCCTCGTTAATTTTAATTGGGAATAATTTGCAAACACATGAGATCAATGAATCTGATCGTAACTTCAAGAACTATTTAACACTATAAAATTCGCGACCATACACAGAGATGAGATTATTCGTAATTAAAACCAGTGATGATCGACGAATGCTGATAATCGATATTAGATAGGAAAAGCAAAACAAAGATATAAATAAATAGAGACAAAGAAGACGCGATTGATAACAAGAAGGGTCTGATACACACTCTCTCTCCGTCGAAATGGCCGCTTCTTCTTCCTCTTCCGACGAGCCTTCTCGCTCTGTCTTCCTCGGCGTCGACGTCGGCACCGGCAGCGCTCGTGCAGGTCTATTTGACGAGGAAGGAAAGCTTCTTGGTTCATCTAGCAGCCCAATACAGATATGGAAAGATGGTGCCTGTGTTGAGCAATCCTCTACAGATATATGGCTTGCAGTTTGTGCAGCTGTAAAAGCAGCTTGTTCTAAAGCTAAAGTTGCATCAACAGAAGTAAAGGGTATGGGATTTGCAGCTACTTGTTCTCTTGTTGCAGTGGATTCTGACAGCTCACCTGTTTCGGTTTCTTGGAGTGGTGATTCAAGAAGAAATGTGATTGTCTGGATGGATCATAGAGCTATAGAACAAGCTGAAAGGATAAATTCGTCTAAATCACCTATATTGGAGTACTGTGGTGCAGCTGTTTCACCTGAAATGGAGCCACCAAAGCTTCTATGGGTCAAAGAAAATTTGCAAGAATCTTGGTCAATGGTTTTCAGGTGGATGGACTTGAGCGATTGGTTGTCATACAGGGCAACCGGTGATGATACTCGTAGTCTATGCACCACAGTTTGTAAATGGACATATCTGGGTCATGCACACATGCAGCATGTCAATGATAAAGAGTCTCGAGACCTGGAAGCTTGTGGATGGGATGATGATTTTTGGGAGGAAATTGGATTGGGTGATCTTATTGAAGGACATCATGCTAAGATAGGACGAAGTGTTGCTTTCCCTGGCCATCCTTTGGGTTCTGGTCTTACTCCTACTGCAGCAAAGGAACTGGGTCTGGTACCAGGAATTCCTGTTGGGACATCATTAATTGATGCTCATGCTGGTGGTGTGGGGGTAATTGAAAGTGTGCCACAATCAGAAGCTGCAGATCATGACAAGGAAGCAATTTGCAACCGTATGGTGTTAGTTTGTGGAACTTCTACATGCCATATGGCTGTATCGCGGAGCAAATTGTTCATTCCTGGGGTTTGGGGTCCATTTTGGTCAGCAATGGTACCAGAATATTGGCTAACAGAAGGTGGACAGAGTGCTACTGGTGCATTATTGGATCATATAATTGAAGACCATGCTGCTTCTGCATGCCTTGCAAATCAAGCTGCTTCCCAAAAGATTTCATTGTTTGAGCTTCTGAACAAGATGTTGGAAACAATGATGGTTGAGCTGAACCTATCCTTTATTGCAGCCTTGACTAAAGATGTACATGTTCTTCCTGACTTCCATGGGAATAGGTCTCCCATTGCAGATCCAAAAGCAAAAGGAGTCATCTATGGTTTGACACTTGACACAAGTGACAAACAGTTGGCTCTTCTTTACCTGGCAACTGTGCAGGGCATTGCATATGGCACACGTCACATTGTAGAGCATTGCAATGCTCATGGTCACAAAGTAAGGATCTGCCGAAAATCAACACATTACTTGCGTGTGGCGGCCTTTCAAAGAATCCTATCTTTATTCAGGAACATGCTGATATTATTGGTTCCCCTATAATTCTTCCAAGGGAAAGTGAACCTGTGCTCTTGGGTGCTGCTATTCTGGGTGCCGTTGCTACAAGGAAATATCATAGCCTTAGCGAGGCCATGAAAGCCCTGAATGCAGCTGGCCAGGTCATTCATCCATCCAAGGATCCAAAGGTAAAAAAATACCATGATGCCAAATACAAGATCTTCCGTGGCCTTTATGAACAGCAGCTCTCGTACCGTTCCGCCATGGCCCAAGCCTTGTCATAGCTTTGCAGAATGTTTTGACTCAAACTGTCAATTGCAATTAGGTGCTCCTTGCGAAGATTGAATATTCATGCTTCAAGGATGAAAGATATTGGGATGGAGAAAGAAATTATGGCCCAAATACTACCAGTTTGACGAATATCGGTTTTCAATTTGGGTGGTAGGTTAGACATTGAACAGTTCAGACTTCAGAGATACAAGGAAAAATAATCACCAATACTGTTGTTAAAATTCTTATAGAAATTTTATGTACAGGCTCACTGGCATCTTATTTTTTACTACCTTGAACGCCTTGCGCACACTTCTCAAAATCAAATAGGCAGCTGCTACTGCTAGCATACATATTGTACAAAAATATAGAGAGCTTGATACTTGGATAGCATCATTGTTCTAAGTTGTACCATATGACTTCCTTGGATTTATTTGGACTTCTTGGAACCCTCCTTCGTAGGAATCGTAGCCCCATAATTCTTAGTCAGACATGATTTTGGGCTTGGATATTACGAAATCATATTGGAATGAATTAAATTTTATAATAATTTTGATCATGGTTATCAAATTCTTGA

Coding sequences of Glyma13g01180

Limit To All Plant Sequences

>Glyma13g01180.2   sequence type=CDS   gene model=Glyma13g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTTCTTCTTCCTCTTCCGACGAGCCTTCTCGCTCTGTCTTCCTCGGCGTCGACGTCGGCACCGGCAGCGCTCGTGCAGGTCTATTTGACGAGGAAGGAAAGCTTCTTGGTTCATCTAGCAGCCCAATACAGATATGGAAAGATGGTGCCTGTGTTGAGCAATCCTCTACAGATATATGGCTTGCAGTTTGTGCAGCTGTAAAAGCAGCTTGTTCTAAAGCTAAAGTTGCATCAACAGAAGTAAAGGGTATGGGATTTGCAGCTACTTGTTCTCTTGTTGCAGTGGATTCTGACAGCTCACCTGTTTCGGTTTCTTGGAGTGGTGATTCAAGAAGAAATGTGATTGTCTGGATGGATCATAGAGCTATAGAACAAGCTGAAAGGATAAATTCGTCTAAATCACCTATATTGGAGTACTGTGGTGCAGCTGTTTCACCTGAAATGGAGCCACCAAAGCTTCTATGGGTCAAAGAAAATTTGCAAGAATCTTGGTCAATGGTTTTCAGGTGGATGGACTTGAGCGATTGGTTGTCATACAGGGCAACCGGTGATGATACTCGTAGTCTATGCACCACAGTTTGTAAATGGACATATCTGGGTCATGCACACATGCAGCATGTCAATGATAAAGAGTCTCGAGACCTGGAAGCTTGTGGATGGGATGATGATTTTTGGGAGGAAATTGGATTGGGTGATCTTATTGAAGGACATCATGCTAAGATAGGACGAAGTGTTGCTTTCCCTGGCCATCCTTTGGGTTCTGGTCTTACTCCTACTGCAGCAAAGGAACTGGGTCTGGTACCAGGAATTCCTGTTGGGACATCATTAATTGATGCTCATGCTGGTGGTGTGGGGGTAATTGAAAGTGTGCCACAATCAGAAGCTGCAGATCATGACAAGGAAGCAATTTGCAACCGTATGGTGTTAGTTTGTGGAACTTCTACATGCCATATGGCTGTATCGCGGAGCAAATTGTTCATTCCTGGGGTTTGGGGTCCATTTTGGTCAGCAATGGTACCAGAATATTGGCTAACAGAAGGTGGACAGAGTGCTACTGGTGCATTATTGGATCATATAATTGAAGACCATGCTGCTTCTGCATGCCTTGCAAATCAAGCTGCTTCCCAAAAGATTTCATTGTTTGAGCTTCTGAACAAGATGTTGGAAACAATGATGGTTGAGCTGAACCTATCCTTTATTGCAGCCTTGACTAAAGATGTACATGTTCTTCCTGACTTCCATGGGAATAGGTCTCCCATTGCAGATCCAAAAGCAAAAGGAGTCATCTATGGTTTGACACTTGACACAAGTGACAAACAGTTGGCTCTTCTTTACCTGGCAACTGTGCAGGGCATTGCATATGGCACACGTCACATTGTAGAGCATTGCAATGCTCATGGTCACAAAATCAACACATTACTTGCGTGTGGCGGCCTTTCAAAGAATCCTATCTTTATTCAGGAACATGCTGATATTATTGGTTCCCCTATAATTCTTCCAAGGGAAAGTGAACCTGTGCTCTTGGGTGCTGCTATTCTGGGTGCCGTTGCTACAAGGAAATATCATAGCCTTAGCGAGGCCATGAAAGCCCTGAATGCAGCTGGCCAGGTCATTCATCCATCCAAGGATCCAAAGGTAAAAAAATACCATGATGCCAAATACAAGATCTTCCGTGGCCTTTATGAACAGCAGCTCTCGTACCGTTCCGCCATGGCCCAAGCCTTGTCATAG

>Glyma13g01180.3   sequence type=CDS   gene model=Glyma13g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTTCTTCTTCCTCTTCCGACGAGCCTTCTCGCTCTGTCTTCCTCGGCGTCGACGTCGGCACCGGCAGCGCTCGTGCAGGTCTATTTGACGAGGAAGGAAAGCTTCTTGGTTCATCTAGCAGCCCAATACAGATATGGAAAGATGGTGCCTGTGTTGAGCAATCCTCTACAGATATATGGCTTGCAGTTTGTGCAGCTGTAAAAGCAGCTTGTTCTAAAGCTAAAGTTGCATCAACAGAAGTAAAGGGTATGGGATTTGCAGCTACTTGTTCTCTTGTTGCAGTGGATTCTGACAGCTCACCTGTTTCGGTTTCTTGGAGTGGTGATTCAAGAAGAAATGTGATTGTCTGGATGGATCATAGAGCTATAGAACAAGCTGAAAGGATAAATTCGTCTAAATCACCTATATTGGAGTACTGTGGTGCAGCTGTTTCACCTGAAATGGAGCCACCAAAGCTTCTATGGGTCAAAGAAAATTTGCAAGAATCTTGGTCAATGGTTTTCAGGTGGATGGACTTGAGCGATTGGTTGTCATACAGGGCAACCGGTGATGATACTCGTAGTCTATGCACCACAGTTTGTAAATGGACATATCTGGGTCATGCACACATGCAGCATGTCAATGATAAAGAGTCTCGAGACCTGGAAGCTTGTGGATGGGATGATGATTTTTGGGAGGAAATTGGATTGGGTGATCTTATTGAAGGACATCATGCTAAGATAGGACGAAGTGTTGCTTTCCCTGGCCATCCTTTGGGTTCTGGTCTTACTCCTACTGCAGCAAAGGAACTGGGTCTGGTACCAGGAATTCCTGTTGGGACATCATTAATTGATGCTCATGCTGGTGGTGTGGGGGTAATTGAAAGTGTGCCACAATCAGAAGCTGCAGATCATGACAAGGAAGCAATTTGCAACCGTATGGTGTTAGTTTGTGGAACTTCTACATGCCATATGGCTGTATCGCGGAGCAAATTGTTCATTCCTGGGGTTTGGGGTCCATTTTGGTCAGCAATGGTACCAGAATATTGGCTAACAGAAGGTGGACAGAGTGCTACTGGTGCATTATTGGATCATATAATTGAAGACCATGCTGCTTCTGCATGCCTTGCAAATCAAGCTGCTTCCCAAAAGATTTCATTGTTTGAGCTTCTGAACAAGATGTTGGAAACAATGATGGTTGAGCTGAACCTATCCTTTATTGCAGCCTTGACTAAAGATGTACATGTTCTTCCTGACTTCCATGGGAATAGGTCTCCCATTGCAGATCCAAAAGCAAAAGGAGTCATCTATGGTTTGACACTTGACACAAGTGACAAACAGTTGGCTCTTCTTTACCTGGCAACTGTGCAGGGCATTGCATATGGCACACGTCACATTGTAGAGCATTGCAATGCTCATGGTCACAAAGTAAGGATCTGCCGAAAATCAACACATTACTTGCGTGTGGCGGCCTTTCAAAGAATCCTATCTTTATTCAGGAACATGCTGATATTATTGGTTCCCCTATAA

Predicted protein sequences of Glyma13g01180

Limit To All Plant Sequences

>Glyma13g01180.2   sequence type=predicted peptide   gene model=Glyma13g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSSSSDEPSRSVFLGVDVGTGSARAGLFDEEGKLLGSSSSPIQIWKDGACVEQSSTDIWLAVCAAVKAACSKAKVASTEVKGMGFAATCSLVAVDSDSSPVSVSWSGDSRRNVIVWMDHRAIEQAERINSSKSPILEYCGAAVSPEMEPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQHVNDKESRDLEACGWDDDFWEEIGLGDLIEGHHAKIGRSVAFPGHPLGSGLTPTAAKELGLVPGIPVGTSLIDAHAGGVGVIESVPQSEAADHDKEAICNRMVLVCGTSTCHMAVSRSKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIEDHAASACLANQAASQKISLFELLNKMLETMMVELNLSFIAALTKDVHVLPDFHGNRSPIADPKAKGVIYGLTLDTSDKQLALLYLATVQGIAYGTRHIVEHCNAHGHKINTLLACGGLSKNPIFIQEHADIIGSPIILPRESEPVLLGAAILGAVATRKYHSLSEAMKALNAAGQVIHPSKDPKVKKYHDAKYKIFRGLYEQQLSYRSAMAQALS*

>Glyma13g01180.3   sequence type=predicted peptide   gene model=Glyma13g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSSSSDEPSRSVFLGVDVGTGSARAGLFDEEGKLLGSSSSPIQIWKDGACVEQSSTDIWLAVCAAVKAACSKAKVASTEVKGMGFAATCSLVAVDSDSSPVSVSWSGDSRRNVIVWMDHRAIEQAERINSSKSPILEYCGAAVSPEMEPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQHVNDKESRDLEACGWDDDFWEEIGLGDLIEGHHAKIGRSVAFPGHPLGSGLTPTAAKELGLVPGIPVGTSLIDAHAGGVGVIESVPQSEAADHDKEAICNRMVLVCGTSTCHMAVSRSKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIEDHAASACLANQAASQKISLFELLNKMLETMMVELNLSFIAALTKDVHVLPDFHGNRSPIADPKAKGVIYGLTLDTSDKQLALLYLATVQGIAYGTRHIVEHCNAHGHKVRICRKSTHYLRVAAFQRILSLFRNMLILLVPL*

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