SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G34930 | AT | Annotation by Michelle Graham. TAIR10: arogenate dehydrogenase | chr5:13233391-13235522 FORWARD LENGTH=640 | SoyBase | E_val: 1.00E-112 | ISS |
| GO:0006567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: threonine catabolic process | SoyBase | N/A | ISS |
| GO:0006571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tyrosine biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004665 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase (NADP+) activity | SoyBase | N/A | ISS |
| GO:0008977 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase activity | SoyBase | N/A | ISS |
| PF02153 | PFAM | Prephenate dehydrogenase | JGI | ISS | |
| PF03807 | PFAM | NADP oxidoreductase coenzyme F420-dependent | JGI | ISS | |
| UniRef100_G7JGK2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Arogenate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7JGK2_MEDTR | SoyBase | E_val: 7.00E-120 | ISS |
| UniRef100_UPI000233BAEB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BAEB related cluster n=1 Tax=unknown RepID=UPI000233BAEB | SoyBase | E_val: 0 | ISS |
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Glyma13g01050 not represented in the dataset |
Glyma13g01050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g095900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g01050.2 sequence type=CDS gene model=Glyma13g01050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGGTGTTTCAAGTTTTCGGCCGCCGGCAGTGTATCCCAGTGCCGGCTTGGATACAAGCCATAAGCTCTTTTGAGAGCTTCAGTACAGAAGCTCTCAAAAGAGCTTATGGCTTGTATCCAAACAGGCACGTCCAGAACCAGAAGCTAAAGATTGGCATCACAGGCTTCGGCAAATTTGGGCAGTTCCTGGCCCGAACCTTGGTTCGACAGGGCCACACCGTCTTGGCCCATTCCCGCTCCGACTACACCCACGTCGCACTCGAACTCGGCGTAACGTTCTTCGAAAAACCCCACGACCTCTGCGACGAACGCCCCGAAGTCATTTTGCTCTGTTGCTCCATACTTTCCGCCAGGCACGTGCTCCTCACTCTTCCTCTGCTGCGTTTGGAGCCTGGCACATTGTTCGTCGACGTCCTTTCTGTCAAGGAGTTTCCCAAAAAGCTCTTGCTCGACGTGCTTCCCACCAATCTAAGGGATTGCAATAGTTTGTTTTGGCAACTTGGTCAGTTTCTCGCAAAAACTATTGTGCGTCAAGGTCATCAAGTGTTGGCATACTCTAGGTCAGACTACTCTAGTATAGCTAGGGAATTGGGTGTTACTTATTTCCATGATGCTGATGATCTCTGTGCACAACATCCCGAGGTAATTTTACTTTGCACATCAATCCCTTCCACAGAGGCTGTTCTTAAATCATTCCCCTTGCAGAAATTGGAGAGAAGTACCTTGTTTGTTGATGTACTTTCTGTCAAGGAATTTCATAGAAACTTGTTTCTTCAACATTTGCCACCTGATTTTGATGTGCTTTGTACCCATCCCATGTTTGGGCCACAAAGTGCAAAAGATGGGTGGAGTGGTTTTCTTTTTGTTTTTGATAAGGTTAGAATAGGAACAGATGAAGCAAGAACATCACGATGTGATTGGTGTCTCAACATTTTTTCTAGTGAAGGGTGTCAGCTTGTTGAAACGCCATGTGCTGAACATGATCGACAAGCAGCTGGATCGCAATTTATCACTCCCACTGTAGGAAGAATTTTAGAAAAGCTGGATTTTTTGGAGCCAACGAAAATTGACACAATAGGCTTTGAGTCTTTGTTGAATTTAATGGATAACACTGTTAGAGACAGTTTTGATCTCTACTTTGATTTGTTCTTGTTTAATAAAAACTCCAGGCAACAACTAGAAAGATTCCATCTAGCTTTTGAGTCATTGCAGAATCAGCTTTTTGATCATGTGCTTGATAACTTAAAGCAAGTATTAAAACTTGAAGAAGAATCCCATGATTAG
>Glyma13g01050.2 sequence type=predicted peptide gene model=Glyma13g01050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPVFQVFGRRQCIPVPAWIQAISSFESFSTEALKRAYGLYPNRHVQNQKLKIGITGFGKFGQFLARTLVRQGHTVLAHSRSDYTHVALELGVTFFEKPHDLCDERPEVILLCCSILSARHVLLTLPLLRLEPGTLFVDVLSVKEFPKKLLLDVLPTNLRDCNSLFWQLGQFLAKTIVRQGHQVLAYSRSDYSSIARELGVTYFHDADDLCAQHPEVILLCTSIPSTEAVLKSFPLQKLERSTLFVDVLSVKEFHRNLFLQHLPPDFDVLCTHPMFGPQSAKDGWSGFLFVFDKVRIGTDEARTSRCDWCLNIFSSEGCQLVETPCAEHDRQAAGSQFITPTVGRILEKLDFLEPTKIDTIGFESLLNLMDNTVRDSFDLYFDLFLFNKNSRQQLERFHLAFESLQNQLFDHVLDNLKQVLKLEEESHD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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