Glyma13g01040 - SoyBase

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Report for Sequence Feature Glyma13g01040

Feature Type:	gene_model
Chromosome:	Gm13
Start:	769887
stop:	775636
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g01040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57490	AT	Annotation by Michelle Graham. TAIR10: voltage dependent anion channel 4 \| chr5:23283895-23285335 REVERSE LENGTH=274	SoyBase	E_val: 6.00E-118	ISS
GO:0006820	GO-bp	Annotation by Michelle Graham. GO Biological Process: anion transport	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0044070	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anion transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005741	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial outer membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008308	GO-mf	Annotation by Michelle Graham. GO Molecular Function: voltage-gated anion channel activity	SoyBase	N/A	ISS
KOG3126	KOG	Porin/voltage-dependent anion-selective channel protein	JGI		ISS
PTHR11743	Panther	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL	JGI		ISS
PTHR11743:SF14	Panther	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL-RELATED	JGI		ISS
PF01459	PFAM	Eukaryotic porin	JGI		ISS
UniRef100_I1LVS0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVS0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6W2J1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: VDAC3.1 n=2 Tax=Lotus japonicus RepID=Q6W2J1_LOTJA	SoyBase	E_val: 4.00E-173	ISS

Expression Patterns of Glyma13g01040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g01040

Paralog	Evidence	Comments
Glyma17g07140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g01040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g096000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g01040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g01040

Limit To All Plant Sequences

>Glyma13g01040.4   sequence type=transcript   gene model=Glyma13g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGCCACGTCACCGTTTTGAGTTCGGTTGAGTAGAGTTGAGACTCTTCCTTTGGCGGCTGCGTCGGTTTCTCTCCGCTTCACGCATTCATTCCTTCTCTTAATTGTGTTTCACAGGGTTCGGTGCATTTCATTCTGATTCACTATGGCCAATGGTCCAGCACCGTTTTCTGAGATTGGAAAAAGGGCAAAAGATCTTTTGTACAAGGATTACAACTTTGATCACAAGTTTAGCCTGTCAATTCCAAACTCCACTGGATTGGGGCTTATAGCAACCGGATTGAAGAAGGATCAAATTTTTGTTGGTGACATAAGTACACTCTACAAGAGTGGAAATACTACAGTGGATGTGAAAGTTGATACATATTCTAATATATCTACAAAAGTGACTGTGAATGATATCTTGCATGGTACAAAAGCCGCTTTGAGCTTCAACATACCTGATCACAAGTCAGGAAAGCTGGATGTGCAATACCTTCATCCTCATGCAGCCGTTGATTCTAGTATTGGTTTGAATCCATCCCCTCTATTGGAGCTTTCAGCTGCAATTGGCAGCAAAGATGTTTGTCTGGGTGCTGAAGTTGGATTTAATACAACTTCTGCTTCATTCACAAAATATAATGCTGGAGTTGCCTTCAATAAACCAGATTTCTCTGCGGCACTTTTGCTGGCTGATAAAGGACAGACCCTGAAGGCATCATACATAAATTATGTTGATCGCCCCGATGGATTTACGGTTGCTGCTGAAATCTCCCACAGTTTTTCCACCTTTGAGAACAGATTTACTATTGGGAGCTCACAGTCAATAGATTCAAAGACAGTTGTAAAGACACGGTTCAGTGACGATGGCAAAGCTGCCTTCCAATGCCAACGAGCATGGAGGCCAAATTCACTTATAACCCTGTCTGCTGAATATGACTCCACAAAGATCTTTGGTTCATCCACCAAGTTCGGTCTTGCTCTTGCTCTCAAGCCTTAACTTGCCCTGGCTATTAAATCTTGTTTGGCGACATCAACTTTTTTCATATCATTTTACATTGTTTCCAAAACCCATGTTGGGTTGTTTTGAGCCCATCATAAGGTAAACCAAAGAAACTAGTAATATTTGTGAAATCTTCTTATGCGGCACCGGTAAGGAGGACCCAGTTTTGAAATACCTACATAATTGCTATAGGGTTTTGTAGCTGGTTAATTACACTACCATCCAGGATCTAGCTTATGATTTTTGGGCCAAATTCTATTATTTGATATAGTGACACTCATGATCAGGTGGATTTGTTGATATGCCTGATGTCTCATTTCATAGTTTTTTCTTCTCCCTAATGTCTACTCATGGCACCAATTTATCATGATCAGGTGGATTTGTTGATATGCCTGATATAGTGACACTCATTATATGTTTTATACTTTCGGTTCCTAGTTTAAATATTAAATGTTACCTTGCCCGTAGAGACGCACAAAA

>Glyma13g01040.5   sequence type=transcript   gene model=Glyma13g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTAGAGGCAAGCAAGGTGTTACAAATTGAGATTGGGGCATTGGTAAAGAGTGGCGTCACAAGCGAGGCCACGAAACCAATAACATAAAAGACATTTAATTTAGAAGCAGTGTCAATAAAGTAAATTGAGTGTAGAGTCTGCCCACACCAACCAATGAGATTTCTCTTTTTTTTATTTTATTTTAACGAAGCATAGGTCTAGGTGTGAATAGGCCACGTCACCGTTTTGAGTTCGGTTGAGTAGAGTTGAGACTCTTCCTTTGGCGGCTGCGTCGGTTTCTCTCCGCTTCACGCATTCATTCCTTCTCTGGTTCGGTGCATTTCATTCTGATTCACTATGGCCAATGGTCCAGCACCGTTTTCTGAGATTGGAAAAAGGGCAAAAGATCTTTTGTACAAGGATTACAACTTTGATCACAAGTTTAGCCTGTCAATTCCAAACTCCACTGGATTGGGGCTTATAGCAACCGGATTGAAGAAGGATCAAATTTTTGTTGGTGACATAAGTACACTCTACAAGAGTGGAAATACTACAGTGGATGTGAAAGTTGATACATATTCTAATATATCTACAAAAGTGACTGTGAATGATATCTTGCATGGTACAAAAGCCGCTTTGAGCTTCAACATACCTGATCACAAGTCAGGAAAGCTGGATGTGCAATACCTTCATCCTCATGCAGCCGTTGATTCTAGTATTGGTTTGAATCCATCCCCTCTATTGGAGCTTTCAGCTGCAATTGGCAGCAAAGATGTTTGTCTGGGTGCTGAAGTTGGATTTAATACAACTTCTGCTTCATTCACAAAATATAATGCTGGAGTTGCCTTCAATAAACCAGATTTCTCTGCGGCACTTTTGCTGGCTGATAAAGGACAGACCCTGAAGGCATCATACATAAATTATGTTGATCGCCCCGATGGATTTACGGTTGCTGCTGAAATCTCCCACAGTTTTTCCACCTTTGAGAACAGATTTACTATTGGGAGCTCACAGTCAATAGATTCAAAGACAGTTGTAAAGACACGGTTCAGTGACGATGGCAAAGCTGCCTTCCAATGCCAACGAGCATGGAGGCCAAATTCACTTATAACCCTGTCTGCTGAATATGACTCCACAAAGATCTTTGGTTCATCCACCAAGTTCGGTCTTGCTCTTGCTCTCAAGCCTTAACTTGCCCTGGCTATTAAATCTTGTTTGGCGACATCAACTTTTTTCATATCATTTTACATTGTTTCCAAAACCCATGTTGGGTTGTTTTGAGCCCATCATAAGGTAAACCAAAGAAACTAGTAATATTTGTGAAATCTTCTTATGCGGCACCGGTAAGGAGGACCCAGTTTTGAAATACCTACATAATTGCTATAGGGTTTTGTAGCTGGTTAATTACACTACCATCCAGGATCTAGCTTATGATTTTTGGGCCAAATTCTATTATTTGATATAGTGACACTCATGATCAGGTGGATTTGTTGATATGCCTGATGTCTCATTTCATAGTTTTTTCTTCTCCCTAATGTCTACTCATGGCACCAATTTATCATGATCAGGTGGATTTGTTGATATGCCTGATATAGTGACACTCATTATATGTTTTATACTTTCGGTTCCTAGTTTAAATATTAAATGTTACCTTGCCCGTAGAGACGCACAAAATTTATGGAGAAAATGGATTTGATGGTGAACTTATTAAGGAAATCAAACGAGAAAACGACAGGGTG

Coding sequences of Glyma13g01040

Limit To All Plant Sequences

>Glyma13g01040.2   sequence type=CDS   gene model=Glyma13g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAATGGTCCAGCACCGTTTTCTGAGATTGGAAAAAGGGCAAAAGATCTTTTGTACAAGGATTACAACTTTGATCACAAGTTTAGCCTGTCAATTCCAAACTCCACTGGATTGGGGCTTATAGCAACCGGATTGAAGAAGGATCAAATTTTTGTTGGTGACATAAGTACACTCTACAAGAGTGGAAATACTACAGTGGATGTGAAAGTTGATACATATTCTAATATATCTACAAAAGTGACTGTGAATGATATCTTGCATGGTACAAAAGCCGCTTTGAGCTTCAACATACCTGATCACAAGTCAGGAAAGCTGGATGTGCAATACCTTCATCCTCATGCAGCCGTTGATTCTAGTATTGGTTTGAATCCATCCCCTCTATTGGAGCTTTCAGCTGCAATTGGCAGCAAAGATGTTTGTCTGGGTGCTGAAGTTGGATTTAATACAACTTCTGCTTCATTCACAAAATATAATGCTGGAGTTGCCTTCAATAAACCAGATTTCTCTGCGGCACTTTTGCTGGCTGATAAAGGACAGACCCTGAAGGCATCATACATAAATTATGTTGATCGCCCCGATGGATTTACGGTTGCTGCTGAAATCTCCCACAGTTTTTCCACCTTTGAGAACAGATTTACTATTGGGAGCTCACAGTCAATAGATTCAAAGACAGTTGTAAAGACACGGTTCAGTGACGATGGCAAAGCTGCCTTCCAATGCCAACGAGCATGGAGGCCAAATTCACTTATAACCCTGTCTGCTGAATATGACTCCACAAAGATCTTTGGTTCATCCACCAAGTTCGGTCTTGCTCTTGCTCTCAAGCCTTAA

>Glyma13g01040.4   sequence type=CDS   gene model=Glyma13g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAATGGTCCAGCACCGTTTTCTGAGATTGGAAAAAGGGCAAAAGATCTTTTGTACAAGGATTACAACTTTGATCACAAGTTTAGCCTGTCAATTCCAAACTCCACTGGATTGGGGCTTATAGCAACCGGATTGAAGAAGGATCAAATTTTTGTTGGTGACATAAGTACACTCTACAAGAGTGGAAATACTACAGTGGATGTGAAAGTTGATACATATTCTAATATATCTACAAAAGTGACTGTGAATGATATCTTGCATGGTACAAAAGCCGCTTTGAGCTTCAACATACCTGATCACAAGTCAGGAAAGCTGGATGTGCAATACCTTCATCCTCATGCAGCCGTTGATTCTAGTATTGGTTTGAATCCATCCCCTCTATTGGAGCTTTCAGCTGCAATTGGCAGCAAAGATGTTTGTCTGGGTGCTGAAGTTGGATTTAATACAACTTCTGCTTCATTCACAAAATATAATGCTGGAGTTGCCTTCAATAAACCAGATTTCTCTGCGGCACTTTTGCTGGCTGATAAAGGACAGACCCTGAAGGCATCATACATAAATTATGTTGATCGCCCCGATGGATTTACGGTTGCTGCTGAAATCTCCCACAGTTTTTCCACCTTTGAGAACAGATTTACTATTGGGAGCTCACAGTCAATAGATTCAAAGACAGTTGTAAAGACACGGTTCAGTGACGATGGCAAAGCTGCCTTCCAATGCCAACGAGCATGGAGGCCAAATTCACTTATAACCCTGTCTGCTGAATATGACTCCACAAAGATCTTTGGTTCATCCACCAAGTTCGGTCTTGCTCTTGCTCTCAAGCCTTAA

>Glyma13g01040.5   sequence type=CDS   gene model=Glyma13g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAATGGTCCAGCACCGTTTTCTGAGATTGGAAAAAGGGCAAAAGATCTTTTGTACAAGGATTACAACTTTGATCACAAGTTTAGCCTGTCAATTCCAAACTCCACTGGATTGGGGCTTATAGCAACCGGATTGAAGAAGGATCAAATTTTTGTTGGTGACATAAGTACACTCTACAAGAGTGGAAATACTACAGTGGATGTGAAAGTTGATACATATTCTAATATATCTACAAAAGTGACTGTGAATGATATCTTGCATGGTACAAAAGCCGCTTTGAGCTTCAACATACCTGATCACAAGTCAGGAAAGCTGGATGTGCAATACCTTCATCCTCATGCAGCCGTTGATTCTAGTATTGGTTTGAATCCATCCCCTCTATTGGAGCTTTCAGCTGCAATTGGCAGCAAAGATGTTTGTCTGGGTGCTGAAGTTGGATTTAATACAACTTCTGCTTCATTCACAAAATATAATGCTGGAGTTGCCTTCAATAAACCAGATTTCTCTGCGGCACTTTTGCTGGCTGATAAAGGACAGACCCTGAAGGCATCATACATAAATTATGTTGATCGCCCCGATGGATTTACGGTTGCTGCTGAAATCTCCCACAGTTTTTCCACCTTTGAGAACAGATTTACTATTGGGAGCTCACAGTCAATAGATTCAAAGACAGTTGTAAAGACACGGTTCAGTGACGATGGCAAAGCTGCCTTCCAATGCCAACGAGCATGGAGGCCAAATTCACTTATAACCCTGTCTGCTGAATATGACTCCACAAAGATCTTTGGTTCATCCACCAAGTTCGGTCTTGCTCTTGCTCTCAAGCCTTAA

Predicted protein sequences of Glyma13g01040

Limit To All Plant Sequences

>Glyma13g01040.2   sequence type=predicted peptide   gene model=Glyma13g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANGPAPFSEIGKRAKDLLYKDYNFDHKFSLSIPNSTGLGLIATGLKKDQIFVGDISTLYKSGNTTVDVKVDTYSNISTKVTVNDILHGTKAALSFNIPDHKSGKLDVQYLHPHAAVDSSIGLNPSPLLELSAAIGSKDVCLGAEVGFNTTSASFTKYNAGVAFNKPDFSAALLLADKGQTLKASYINYVDRPDGFTVAAEISHSFSTFENRFTIGSSQSIDSKTVVKTRFSDDGKAAFQCQRAWRPNSLITLSAEYDSTKIFGSSTKFGLALALKP*

>Glyma13g01040.4   sequence type=predicted peptide   gene model=Glyma13g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANGPAPFSEIGKRAKDLLYKDYNFDHKFSLSIPNSTGLGLIATGLKKDQIFVGDISTLYKSGNTTVDVKVDTYSNISTKVTVNDILHGTKAALSFNIPDHKSGKLDVQYLHPHAAVDSSIGLNPSPLLELSAAIGSKDVCLGAEVGFNTTSASFTKYNAGVAFNKPDFSAALLLADKGQTLKASYINYVDRPDGFTVAAEISHSFSTFENRFTIGSSQSIDSKTVVKTRFSDDGKAAFQCQRAWRPNSLITLSAEYDSTKIFGSSTKFGLALALKP*

>Glyma13g01040.5   sequence type=predicted peptide   gene model=Glyma13g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANGPAPFSEIGKRAKDLLYKDYNFDHKFSLSIPNSTGLGLIATGLKKDQIFVGDISTLYKSGNTTVDVKVDTYSNISTKVTVNDILHGTKAALSFNIPDHKSGKLDVQYLHPHAAVDSSIGLNPSPLLELSAAIGSKDVCLGAEVGFNTTSASFTKYNAGVAFNKPDFSAALLLADKGQTLKASYINYVDRPDGFTVAAEISHSFSTFENRFTIGSSQSIDSKTVVKTRFSDDGKAAFQCQRAWRPNSLITLSAEYDSTKIFGSSTKFGLALALKP*

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