Glyma13g01030 - SoyBase

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Report for Sequence Feature Glyma13g01030

Feature Type:	gene_model
Chromosome:	Gm13
Start:	764822
stop:	769085
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g01030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18840	AT	Annotation by Michelle Graham. TAIR10: Integral membrane Yip1 family protein \| chr2:8158288-8159848 FORWARD LENGTH=281	SoyBase	E_val: 7.00E-134	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2946	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21236	Panther	GOLGI MEMBRANE PROTEIN YIP1	JGI		ISS
PTHR21236:SF1	Panther	YIP1-RELATED	JGI		ISS
PF04893	PFAM	Yip1 domain	JGI		ISS
UniRef100_B6TPW7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Yip1 domain family member 6 n=1 Tax=Zea mays RepID=B6TPW7_MAIZE	SoyBase	E_val: 3.00E-129	ISS
UniRef100_I1LVR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVR5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g01030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g01030

Paralog	Evidence	Comments
Glyma17g07130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g01030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g096100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g01030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g01030

Limit To All Plant Sequences

>Glyma13g01030.2   sequence type=transcript   gene model=Glyma13g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATAGTTTATATGAACAGCACGCAAGGTTGATTAAGGAGACGAAAGGAAGAAGTGAAGTGCAGTGATCATTTTGTTGTTGGGTGTGAGTCTTGGGTGTGAAAATGTCGCACAGCGATACCATACCCCTTCACCCATCTTCCCAATCCGACATCGACGAGATCGAGAACCTCATCAATGCCAGCGTTCACCAATCAGTCCCTTCGGCGAGACCCCCCAGTCCCCCACGCGCCTCCATCCCCGTCTCCGTCTCCGTCTCCACTGCCCCTTCCCCCTTCATCTCTTCCAACCTCCCTCCGCCCCCTCCCCTCCCCAAATCCTCCGTCTCCGCCGTCACTCCGTCCCCACCTCCGCCTCGCCCCGGCATCGCCACCTCCGGGTTCGGTCCCGCCCCCAACACGCTCACCGAGCCCGTCTGGGACACCGTGAAGCGCGATCTCTCGAGAATCGTGAGCAATCTGAAGCTCGTTGTGTTCCCCAACCCTTACCGTGAGGACCCCGGTAAGGCCCTCCGGGATTGGGATCTGTGGGGCCCATTCTTCTTCATTGTCTTCCTCGGCCTCACCCTCTCTTGGTCTGCCTCTGTCAAAAAGTCTGAGGTTTTTGCTGTTGCATTTGCTTTACTTGCTGCTGGCGCTGTAATTTTGACATTGAATGTACTTCTTCTGGTAATAGCCTCTTTCTCTCTCTCTTCATCTACTCATATTTTGAGTGCCGAACTTTTTGTGTGATGCTGAAGGGTGGTGGACCTGACCATTCTCAAAAGTATACTTTGATGAATGAGGCCAAATATTTGACTGTCTTCATCATCTCTTCAA

>Glyma13g01030.3   sequence type=transcript   gene model=Glyma13g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATAGTTTATATGAACAGCACGCAAGGTTGATTAAGGAGACGAAAGGAAGAAGTGAAGTGCAGTGATCATTTTGTTGTTGGGTGTGAGTCTTGGGTGTGAAAATGTCGCACAGCGATACCATACCCCTTCACCCATCTTCCCAATCCGACATCGACGAGATCGAGAACCTCATCAATGCCAGCGTTCACCAATCAGTCCCTTCGGCGAGACCCCCCAGTCCCCCACGCGCCTCCATCCCCGTCTCCGTCTCCGTCTCCACTGCCCCTTCCCCCTTCATCTCTTCCAACCTCCCTCCGCCCCCTCCCCTCCCCAAATCCTCCGTCTCCGCCGTCACTCCGTCCCCACCTCCGCCTCGCCCCGGCATCGCCACCTCCGGGTTCGGTCCCGCCCCCAACACGCTCACCGAGCCCGTCTGGGACACCGTGAAGCGCGATCTCTCGAGAATCGTGAGCAATCTGAAGCTCGTTGTGTTCCCCAACCCTTACCGTGAGGACCCCGGTAAGGCCCTCCGGGATTGGGATCTGTGGGGCCCATTCTTCTTCATTGTCTTCCTCGGCCTCACCCTCTCTTGGTCTGCCTCTGTCAAAAAGGTTGATGGTTCTGATTCTGCCTGTTAGGATTCATGGTGGCATGGGCTTGACATTTTTGCCAACCAGCATTTATGTCCGTCAGTTTGCTGCACATGTACTACCTATGTCATGTGGAGCACCATTTCTACCAAGTGTTTTTCCTAAATCATTCTGCTTGAAGTTTCCAAATTATATATTGTTAATCATGGTAGTAAAATGGGATTCAAATCATGAACCAGCACGCCTATTTTTTCGAAACGTGAATCGAATCGTATCATGAATCATAACTCTAGGAACATTTTAACATAAATAA

Coding sequences of Glyma13g01030

Limit To All Plant Sequences

>Glyma13g01030.1   sequence type=CDS   gene model=Glyma13g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCACAGCGATACCATACCCCTTCACCCATCTTCCCAATCCGACATCGACGAGATCGAGAACCTCATCAATGCCAGCGTTCACCAATCAGTCCCTTCGGCGAGACCCCCCAGTCCCCCACGCGCCTCCATCCCCGTCTCCGTCTCCGTCTCCACTGCCCCTTCCCCCTTCATCTCTTCCAACCTCCCTCCGCCCCCTCCCCTCCCCAAATCCTCCGTCTCCGCCGTCACTCCGTCCCCACCTCCGCCTCGCCCCGGCATCGCCACCTCCGGGTTCGGTCCCGCCCCCAACACGCTCACCGAGCCCGTCTGGGACACCGTGAAGCGCGATCTCTCGAGAATCGTGAGCAATCTGAAGCTCGTTGTGTTCCCCAACCCTTACCGTGAGGACCCCGGTAAGGCCCTCCGGGATTGGGATCTGTGGGGCCCATTCTTCTTCATTGTCTTCCTCGGCCTCACCCTCTCTTGGTCTGCCTCTGTCAAAAAGTCTGAGGTTTTTGCTGTTGCATTTGCTTTACTTGCTGCTGGCGCTGTAATTTTGACATTGAATGTACTTCTTCTGGGTGGACACATTATTTTCTTTCAGAGTCTGAGTCTGTTGGGTTATTGCTTGTTCCCTCTGGACGTTGGTGCATTAATTTGTATGTTGAAGGACAATGTCATTGTGAAAGTGGTTGTGGTGTGTGTGACATTGGCTTGGAGCTCTTGGGCTGCATATCCTTTCATGAGTTCTGCAGTCAGCCCCAGGAGAAAAGCTCTTGCACTATACCCAGTTTTTCTCATGTATGTATCTGTTGGTTTTCTCATCATTGCCATTGACTAA

>Glyma13g01030.2   sequence type=CDS   gene model=Glyma13g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCACAGCGATACCATACCCCTTCACCCATCTTCCCAATCCGACATCGACGAGATCGAGAACCTCATCAATGCCAGCGTTCACCAATCAGTCCCTTCGGCGAGACCCCCCAGTCCCCCACGCGCCTCCATCCCCGTCTCCGTCTCCGTCTCCACTGCCCCTTCCCCCTTCATCTCTTCCAACCTCCCTCCGCCCCCTCCCCTCCCCAAATCCTCCGTCTCCGCCGTCACTCCGTCCCCACCTCCGCCTCGCCCCGGCATCGCCACCTCCGGGTTCGGTCCCGCCCCCAACACGCTCACCGAGCCCGTCTGGGACACCGTGAAGCGCGATCTCTCGAGAATCGTGAGCAATCTGAAGCTCGTTGTGTTCCCCAACCCTTACCGTGAGGACCCCGGTAAGGCCCTCCGGGATTGGGATCTGTGGGGCCCATTCTTCTTCATTGTCTTCCTCGGCCTCACCCTCTCTTGGTCTGCCTCTGTCAAAAAGTCTGAGGTTTTTGCTGTTGCATTTGCTTTACTTGCTGCTGGCGCTGTAATTTTGACATTGAATGTACTTCTTCTGGTAATAGCCTCTTTCTCTCTCTCTTCATCTACTCATATTTTGAGTGCCGAACTTTTTGTGTGA

>Glyma13g01030.3   sequence type=CDS   gene model=Glyma13g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCACAGCGATACCATACCCCTTCACCCATCTTCCCAATCCGACATCGACGAGATCGAGAACCTCATCAATGCCAGCGTTCACCAATCAGTCCCTTCGGCGAGACCCCCCAGTCCCCCACGCGCCTCCATCCCCGTCTCCGTCTCCGTCTCCACTGCCCCTTCCCCCTTCATCTCTTCCAACCTCCCTCCGCCCCCTCCCCTCCCCAAATCCTCCGTCTCCGCCGTCACTCCGTCCCCACCTCCGCCTCGCCCCGGCATCGCCACCTCCGGGTTCGGTCCCGCCCCCAACACGCTCACCGAGCCCGTCTGGGACACCGTGAAGCGCGATCTCTCGAGAATCGTGAGCAATCTGAAGCTCGTTGTGTTCCCCAACCCTTACCGTGAGGACCCCGGTAAGGCCCTCCGGGATTGGGATCTGTGGGGCCCATTCTTCTTCATTGTCTTCCTCGGCCTCACCCTCTCTTGGTCTGCCTCTGTCAAAAAGGTTGATGGTTCTGATTCTGCCTGTTAG

Predicted protein sequences of Glyma13g01030

Limit To All Plant Sequences

>Glyma13g01030.1   sequence type=predicted peptide   gene model=Glyma13g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHSDTIPLHPSSQSDIDEIENLINASVHQSVPSARPPSPPRASIPVSVSVSTAPSPFISSNLPPPPPLPKSSVSAVTPSPPPPRPGIATSGFGPAPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVIVKVVVVCVTLAWSSWAAYPFMSSAVSPRRKALALYPVFLMYVSVGFLIIAID*

>Glyma13g01030.2   sequence type=predicted peptide   gene model=Glyma13g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHSDTIPLHPSSQSDIDEIENLINASVHQSVPSARPPSPPRASIPVSVSVSTAPSPFISSNLPPPPPLPKSSVSAVTPSPPPPRPGIATSGFGPAPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLVIASFSLSSSTHILSAELFV*

>Glyma13g01030.3   sequence type=predicted peptide   gene model=Glyma13g01030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHSDTIPLHPSSQSDIDEIENLINASVHQSVPSARPPSPPRASIPVSVSVSTAPSPFISSNLPPPPPLPKSSVSAVTPSPPPPRPGIATSGFGPAPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKVDGSDSAC*

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