Glyma13g01000 - SoyBase

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Report for Sequence Feature Glyma13g01000

Feature Type:	gene_model
Chromosome:	Gm13
Start:	730383
stop:	735661
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g01000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57440	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:23271518-23272900 REVERSE LENGTH=240	SoyBase	E_val: 1.00E-135	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2914	KOG	Predicted haloacid-halidohydrolase and related hydrolases	JGI		ISS
PTHR18901	Panther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_G7JVF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Haloacid dehalogenase-like hydrolase domain-containing protein 1A n=2 Tax=Medicago truncatula RepID=G7JVF5_MEDTR	SoyBase	E_val: 4.00E-145	ISS
UniRef100_I1LVR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVR2_SOYBN	SoyBase	E_val: 2.00E-176	ISS

Expression Patterns of Glyma13g01000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g01000 not represented in the dataset	Glyma13g01000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g01000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g096400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g01000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g01000

Limit To All Plant Sequences

>Glyma13g01000.2   sequence type=transcript   gene model=Glyma13g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTACGAAACACATGTTCCGGAAACAATCTCAAAACTCAAAATAGGACATTTCTGAGAAGAAGAGTTAAGTTGAGTCGAGAAGAAGAAAAGAACAAGAAAGGGAGAGTATGGACTCGTGCTGAATGTGGGAGAAAGAAGAGGAAGAGGGGAAGGACAGAATCGACAGAAGGTAAAAGGGGTAGATTGGGGTTTTTAAAAAACTTGAGAGGTGCGGGATGCAATAAAAGGGTGCAGATTGCCCTTGGAAAAACATCCGAAGATCGCTTAAACGTCTCTCTCTCTTCGTCCCTTGCTCTGTAGCTTGGAATCTGCAGTTGTAGATCGGAGACTGGGCAAGAAGGTCGCATTAGCTTCTTCATCGCGCAATGGCCCATCCCTCTGCTGTCGTCTCCGTCAGAAGGCCAATCACCCACGTCGTTTTTGACATGGACGGTCTCTTGCTCGACACTGAGAGGTTCTATACTCAAGTCCAGGAAATCATACTCGCTAGGTACAACAAAACCTTTGATTGGTCCCTAAAGGCAAAGATGATGGGAAAAAAAGCAATAGAATCTGCTAGGATCTTTGTTGAAGAGACTGGAATTAGTGATTCTCTTAGTGCCGAGCAATTCCTGGTAGAAAGAGAGGATATGCTGGAGAAGTTGTTTCCTACTAGTGAGCCTATGCCAGGTGCTAGCCGTTTAGTCAATCATCTACATGCAAAAGGAGTTCCAGTCTGTGTGGCAACTGGTTCTCACAAGCGACATTTTGAATTGAAAACTCAAAGACATCATGAAATCTTCTCTTTGATGCATCATGTTGTTCTTGGTGGTGGCCCAGAAGCTAAACAAAGCAAACCTTCTCCGGATGGATTTCTTGCAGCAGCCAAGAGATTTGAGGTCTGTTGTTATGGTCCCTGATCCAAGGCTGGATAAGTCTTTTCTTGATACAGCAGATCAAGTTTTGAACTCACTGTTGGATTTCAACCCTAGTGAGTGGGGTTTACCTCCTTTTGATGATAATAGAGACTGAAATCGTACATTCTTATTGCAGACAGAAAGAGCTGATGAGTAGTTAATCCATTTCCGTAGATTATTTGACTTTTATATCATTGTTCTTGGTGAATTACTACAATTGATATTGACTTTTTAGATCTTAGAGAGTCAATGTATCGTTTACATATTTGGCCTTCAAACTTCGCTGATACATACAATGCTGTTTGGCACCGTTTAATGGTAATAATTCGTTAAATAGCAGCAATTCAACATAAATCTCATTTTTTTCCTTTG

>Glyma13g01000.3   sequence type=transcript   gene model=Glyma13g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTTACGAAACACATGTTCCGGAAACAATCTCAAAACTCAAAATAGGACATTTCTGAGAAGAAGAGTTAAGTTGAGTCGAGAAGAAGAAAAGAACAAGAAAGGGAGAGTATGGACTCGTGCTGAATGTGGGAGAAAGAAGAGGAAGAGGGGAAGGACAGAATCGACAGAAGGTAAAAGGGGTAGATTGGGGTTTTTAAAAAACTTGAGAGGTGCGGGATGCAATAAAAGGGTGCAGATTGCCCTTGGAAAAACATCCGAAGATCGCTTAAACGTCTCTCTCTCTTCGTCCCTTGCTCTGTAGCTTGGAATCTGCAGTTGTAGATCGGAGACTGGGCAAGAAGGTCGCATTAGCTTCTTCATCGCGCAATGGCCCATCCCTCTGCTGTCGTCTCCGTCAGAAGGCCAATCACCCACGTCGTTTTTGACATGGACGGTCTCTTGCTCGACACTGAGAGGTTCTATACTCAAGTCCAGGAAATCATACTCGCTAGGTACAACAAAACCTTTGATTGGTCCCTAAAGGCAAAGATGATGGGAAAAAAAGCAATAGAATCTGCTAGGATCTTTGTTGAAGAGACTGGAATTAGTGATTCTCTTAGTGCCGAGCAATTCCTGGTAGAAAGAGAGGATATGCTGGAGAAGTTGTTTCCTACTAGTGAGCCTATGCCAGGTGCTAGCCGTTTAGTCAATCATCTACATGCAAAAGGAGTTCCAGTCTGTGTGGCAACTGGTTCTCACAAGCGACATTTTGAATTGAAAACTCAAAGACATCATGAAATCTTCTCTTTGATGCATCATGTTGTTCTTGGTGGTGGCCCAGAAGCTAAACAAAGCAAACCTTCTCCGGATGGATTTCTTGCAGCAGCCAAGAGATTTGAGATGCACCCGCAGGAGTTCTTGCAGCTAAGAATGCTGGAATGTCTGTTGTTATGGTCCCTGATCCAAGGCTGGATAAGTCTTTTCTTGATACAGCAGATCAAGTTTTGAACTCACTGTTGGATTTCAACCCTAGTGAGTGGGGTTTACCTCCTTTTGATGATAATAGAGACTGAAATCGTACATTCTTATTGCAGACAGAAAGAGCTGATGAGTAGTTAATCCATTTCCGTAGATTATTTGACTTTTATATCATTGTTCTTGGTGAATTACTACAATTGATATTGACTTTTTAGATCTTAGAGAGTCAATGTATCGTTTACATATTTGGCCTTCAAACTTCGCTGATACATACAATGCTGTTTGGCACCGTTTAATGGTAATAATTCGTTAAATAGCAGCAATTCAACATAAATCTCATTTTTTTCCTTTG

Coding sequences of Glyma13g01000

Limit To All Plant Sequences

>Glyma13g01000.1   sequence type=CDS   gene model=Glyma13g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCATCCCTCTGCTGTCGTCTCCGTCAGAAGGCCAATCACCCACGTCGTTTTTGACATGGACGGTCTCTTGCTCGACACTGAGAGGTTCTATACTCAAGTCCAGGAAATCATACTCGCTAGGTACAACAAAACCTTTGATTGGTCCCTAAAGGCAAAGATGATGGGAAAAAAAGCAATAGAATCTGCTAGGATCTTTGTTGAAGAGACTGGAATTAGTGATTCTCTTAGTGCCGAGCAATTCCTGGTAGAAAGAGAGGATATGCTGGAGAAGTTGTTTCCTACTAGTGAGCCTATGCCAGGTGCTAGCCGTTTAGTCAATCATCTACATGCAAAAGGAGTTCCAGTCTGTGTGGCAACTGGTTCTCACAAGCGACATTTTGAATTGAAAACTCAAAGACATCATGAAATCTTCTCTTTGATGCATCATGTTGTTCTTGGTGGTGGCCCAGAAGCTAAACAAAGCAAACCTTCTCCGGATGGATTTCTTGCAGCAGCCAAGAGATTTGAGGGTGGACCGGTAGATCCTTCTAACATTCTTGTTTTTGAAGATGCACCCGCAGGAGTTCTTGCAGCTAAGAATGCTGGAATGTCTGTTGTTATGGTCCCTGATCCAAGGCTGGATAAGTCTTTTCTTGATACAGCAGATCAAGTTTTGAACTCACTGTTGGATTTCAACCCTAGTGAGTGGGGTTTACCTCCTTTTGATGATAATAGAGACTGA

>Glyma13g01000.2   sequence type=CDS   gene model=Glyma13g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCATCCCTCTGCTGTCGTCTCCGTCAGAAGGCCAATCACCCACGTCGTTTTTGACATGGACGGTCTCTTGCTCGACACTGAGAGGTTCTATACTCAAGTCCAGGAAATCATACTCGCTAGGTACAACAAAACCTTTGATTGGTCCCTAAAGGCAAAGATGATGGGAAAAAAAGCAATAGAATCTGCTAGGATCTTTGTTGAAGAGACTGGAATTAGTGATTCTCTTAGTGCCGAGCAATTCCTGGTAGAAAGAGAGGATATGCTGGAGAAGTTGTTTCCTACTAGTGAGCCTATGCCAGGTGCTAGCCGTTTAGTCAATCATCTACATGCAAAAGGAGTTCCAGTCTGTGTGGCAACTGGTTCTCACAAGCGACATTTTGAATTGAAAACTCAAAGACATCATGAAATCTTCTCTTTGATGCATCATGTTGTTCTTGGTGGTGGCCCAGAAGCTAAACAAAGCAAACCTTCTCCGGATGGATTTCTTGCAGCAGCCAAGAGATTTGAGGTCTGTTGTTATGGTCCCTGA

>Glyma13g01000.3   sequence type=CDS   gene model=Glyma13g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCATCCCTCTGCTGTCGTCTCCGTCAGAAGGCCAATCACCCACGTCGTTTTTGACATGGACGGTCTCTTGCTCGACACTGAGAGGTTCTATACTCAAGTCCAGGAAATCATACTCGCTAGGTACAACAAAACCTTTGATTGGTCCCTAAAGGCAAAGATGATGGGAAAAAAAGCAATAGAATCTGCTAGGATCTTTGTTGAAGAGACTGGAATTAGTGATTCTCTTAGTGCCGAGCAATTCCTGGTAGAAAGAGAGGATATGCTGGAGAAGTTGTTTCCTACTAGTGAGCCTATGCCAGGTGCTAGCCGTTTAGTCAATCATCTACATGCAAAAGGAGTTCCAGTCTGTGTGGCAACTGGTTCTCACAAGCGACATTTTGAATTGAAAACTCAAAGACATCATGAAATCTTCTCTTTGATGCATCATGTTGTTCTTGGTGGTGGCCCAGAAGCTAAACAAAGCAAACCTTCTCCGGATGGATTTCTTGCAGCAGCCAAGAGATTTGAGATGCACCCGCAGGAGTTCTTGCAGCTAAGAATGCTGGAATGTCTGTTGTTATGGTCCCTGATCCAAGGCTGGATAAGTCTTTTCTTGATACAGCAGATCAAGTTTTGA

Predicted protein sequences of Glyma13g01000

Limit To All Plant Sequences

>Glyma13g01000.1   sequence type=predicted peptide   gene model=Glyma13g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHPSAVVSVRRPITHVVFDMDGLLLDTERFYTQVQEIILARYNKTFDWSLKAKMMGKKAIESARIFVEETGISDSLSAEQFLVEREDMLEKLFPTSEPMPGASRLVNHLHAKGVPVCVATGSHKRHFELKTQRHHEIFSLMHHVVLGGGPEAKQSKPSPDGFLAAAKRFEGGPVDPSNILVFEDAPAGVLAAKNAGMSVVMVPDPRLDKSFLDTADQVLNSLLDFNPSEWGLPPFDDNRD*

>Glyma13g01000.2   sequence type=predicted peptide   gene model=Glyma13g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHPSAVVSVRRPITHVVFDMDGLLLDTERFYTQVQEIILARYNKTFDWSLKAKMMGKKAIESARIFVEETGISDSLSAEQFLVEREDMLEKLFPTSEPMPGASRLVNHLHAKGVPVCVATGSHKRHFELKTQRHHEIFSLMHHVVLGGGPEAKQSKPSPDGFLAAAKRFEVCCYGP*

>Glyma13g01000.3   sequence type=predicted peptide   gene model=Glyma13g01000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHPSAVVSVRRPITHVVFDMDGLLLDTERFYTQVQEIILARYNKTFDWSLKAKMMGKKAIESARIFVEETGISDSLSAEQFLVEREDMLEKLFPTSEPMPGASRLVNHLHAKGVPVCVATGSHKRHFELKTQRHHEIFSLMHHVVLGGGPEAKQSKPSPDGFLAAAKRFEMHPQEFLQLRMLECLLLWSLIQGWISLFLIQQIKF*

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