Glyma13g00980 - SoyBase

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Report for Sequence Feature Glyma13g00980

Feature Type:	gene_model
Chromosome:	Gm13
Start:	704191
stop:	709796
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g00980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57410	AT	Annotation by Michelle Graham. TAIR10: Afadin/alpha-actinin-binding protein \| chr5:23265102-23267641 REVERSE LENGTH=373	SoyBase	E_val: 0	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR21736	Panther	VERNALIZATION-INSENSITIVE PROTEIN 3	JGI		ISS
PTHR21736:SF19	Panther	UNKNOWN PROTEIN	JGI		ISS
PF11559	PFAM	Afadin- and alpha -actinin-Binding	JGI		ISS
UniRef100_G7JVE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Afadin-and alpha-actinin-binding protein n=1 Tax=Medicago truncatula RepID=G7JVE2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LVR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVR1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g00980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g00980

Paralog	Evidence	Comments
Glyma17g07040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g00980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g096600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g00980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g00980

Limit To All Plant Sequences

>Glyma13g00980.2   sequence type=transcript   gene model=Glyma13g00980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGCATCCCAACCAAAAAGAAATAGAAAACCCTGCACGTCTAATTCAACCAAAGGATTCTCATAATCACAACTAAAATATAGCTCTATTTGGCACTCAAAGAAAAGTCCATCTGAAGCCAGCTGTAGGTTTGCAATTGGAGGGTGCAAAAACAAACATCCAGATCTGACCGCAGAGTATTATTAACCAGAGCACCCGTTTCATTTATTCCTCTTTCAAATTTGGATCTAAGAACTAACACTGCTACTACTATTACTACTACTCATAGTCACACGCAGAGCCCATAAAAGAAGCTCCCTCTCTTGCTCTCTTTTTAACAACTATGCCTCCCACTGATGGAGACTTGGATCTTAGGCCACCTTCTCAATCTTCCTTCACAGCCGGCGACTACACGTTCGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCCGTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACGACTGTTGTCTGACATATCGAGATTGGAGGCCAAAGTGGAGAGGCTGGAAGGTCTACTACAAGTCAAGGACAGGGAGATAGCGACTATTACTAGAACGGAGGCTAAAAACACTGCAGCTCTGAAGGCTCAAATTGAGAAGCTGCAACAGGAGAGGGATGAATTTCAGAGAATGGTTATTGGTAATCAGCAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAGGAATACATAAAGTTGCAGGAGAGGCTAAACCAAGTGTTGATGGAGAAGAAGAAAGAGTCTAGGTCAGGCATGGAGATAATGAATTTGCTTCAGAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATTTTTATAAAAAGATTGTGGATGCTTATGAGTCAAAGAATCAAGAACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAGGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCTCTCACTGGCAATGAAAGAGTTGAAAGTGATCCTTCACAATCTCCATTGGTTGGGAAAATGGACGTATTTGACCTTCCTTTTCACATGGCCAGAGATCAAATAGAAGAAAGTCTTCGTAACAAAATGGCTTCTATAAAGGAGCGCATGGTTCAATTGCAAGATGCTCAAAAGGAAGCAGAAGTTACTTCTGAGGCTACTGAGAGGGAACTTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCATACAGGAGCAGGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGGCAGTATGTAATTAACAAAGCTGAGGATACTCACATTTGATGCTTGGCATGATTAATTGAGTTGGCTCTCCAGTGTAACAGGAATGGACAGCATGCTTTTAGCCTGTTTTTCTAATCTTGCTTGTTCATCGTGCACTGCCCTAGTTTATATTAACAGGCCCGAGTATGGTCGAATATCATTGTAATTATTAGCATGATGTTGTAATTAGTGTTATTGTACCCGTGGAACTGCTAGAAGAAAAAATAGATCATATTTATGTCACAAGAACCATTCAAACTACATAACATTTAAGATTGACAGCTAGAAATATTTTATACTACCACTTTTGGCTCTTCT

Coding sequences of Glyma13g00980

Limit To All Plant Sequences

>Glyma13g00980.1   sequence type=CDS   gene model=Glyma13g00980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCCCACTGATGGAGACTTGGATCTTAGGCCACCTTCTCAATCTTCCTTCACAGCCGGCGACTACACGTTCGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCCGTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACGACTGTTGTCTGACATATCGAGATTGGAGGCCAAAGTGGAGAGGCTGGAAGGTCTACTACAAGTCAAGGACAGGGAGATAGCGACTATTACTAGAACGGAGGCTAAAAACACTGCAGCTCTGAAGGCTCAAATTGAGAAGCTGCAACAGGAGAGGGATGAATTTCAGAGAATGGTTATTGGTAATCAGCAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAGGAATACATAAAGTTGCAGGAGAGGCTAAACCAAGTGTTGATGGAGAAGAAGAAAGAGTCTAGGTCAGGCATGGAGATAATGAATTTGCTTCAGAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATTTTTATAAAAAGATTGTGGATGCTTATGAGTCAAAGAATCAAGAACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAGGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCTCTCACTGGCAATGAAAGAGTTGAAAGTGATCCTTCACAATCTCCATTGGTTGGGAAAATGGACGTATTTGACCTTCCTTTTCACATGGCCAGAGATCAAATAGAAGAAAGTCTTCGTAACAAAATGGCTTCTATAAAGGAGCGCATGGTTCAATTGCAAGATGCTCAAAAGGAAGCAGAAGTTACTTCTGAGGCTACTGAGAGGGAACTTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCATACAGGAGCAGGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGGGAATCTATCATCCCAGCACCGGCTGAGGCAGTATGTAATTAA

>Glyma13g00980.2   sequence type=CDS   gene model=Glyma13g00980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCCCACTGATGGAGACTTGGATCTTAGGCCACCTTCTCAATCTTCCTTCACAGCCGGCGACTACACGTTCGCCGATGTTGAGAATTTGGAGCATTGCGCTAGGTATCTCAACCAATCGCTCGTCACGTTTGGTTTCCCGGCTTCTCTCGATCTCTTCGCAAATGACCCCGTTTCAATTGCGAGGACTTGCAATTGCATTTACTTCTTGCTCCAGCAGAGACAGCGCGACGTTGAATTTAGAGAGTCTGCTAATGATCAAAGACAACGACTGTTGTCTGACATATCGAGATTGGAGGCCAAAGTGGAGAGGCTGGAAGGTCTACTACAAGTCAAGGACAGGGAGATAGCGACTATTACTAGAACGGAGGCTAAAAACACTGCAGCTCTGAAGGCTCAAATTGAGAAGCTGCAACAGGAGAGGGATGAATTTCAGAGAATGGTTATTGGTAATCAGCAAGTAAAGACTCAACAAATGCATGAGATGAAGAAGAAGGAAAAGGAATACATAAAGTTGCAGGAGAGGCTAAACCAAGTGTTGATGGAGAAGAAGAAAGAGTCTAGGTCAGGCATGGAGATAATGAATTTGCTTCAGAAGGAAGGGAGGCAACGTGGAACATGGAATGGGAAGAAAGCTGACAATGATTTTTATAAAAAGATTGTGGATGCTTATGAGTCAAAGAATCAAGAACTGATGGCAGAGAATGCTGATTTAAGAGCATTATTGAGATCAATGCAGGTGGATATGCGTGATTTCTTAAATGCTCCTAATGGACTACCAAAGCAATCTCTCACTGGCAATGAAAGAGTTGAAAGTGATCCTTCACAATCTCCATTGGTTGGGAAAATGGACGTATTTGACCTTCCTTTTCACATGGCCAGAGATCAAATAGAAGAAAGTCTTCGTAACAAAATGGCTTCTATAAAGGAGCGCATGGTTCAATTGCAAGATGCTCAAAAGGAAGCAGAAGTTACTTCTGAGGCTACTGAGAGGGAACTTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCATACAGGAGCAGGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGGCAGTATGTAATTAACAAAGCTGAGGATACTCACATTTGA

Predicted protein sequences of Glyma13g00980

Limit To All Plant Sequences

>Glyma13g00980.1   sequence type=predicted peptide   gene model=Glyma13g00980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPTDGDLDLRPPSQSSFTAGDYTFADVENLEHCARYLNQSLVTFGFPASLDLFANDPVSIARTCNCIYFLLQQRQRDVEFRESANDQRQRLLSDISRLEAKVERLEGLLQVKDREIATITRTEAKNTAALKAQIEKLQQERDEFQRMVIGNQQVKTQQMHEMKKKEKEYIKLQERLNQVLMEKKKESRSGMEIMNLLQKEGRQRGTWNGKKADNDFYKKIVDAYESKNQELMAENADLRALLRSMQVDMRDFLNAPNGLPKQSLTGNERVESDPSQSPLVGKMDVFDLPFHMARDQIEESLRNKMASIKERMVQLQDAQKEAEVTSEATERELELEAQLVEARSIIQEQASIMSKHLAKSDRPRESIIPAPAEAVCN*

>Glyma13g00980.2   sequence type=predicted peptide   gene model=Glyma13g00980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPTDGDLDLRPPSQSSFTAGDYTFADVENLEHCARYLNQSLVTFGFPASLDLFANDPVSIARTCNCIYFLLQQRQRDVEFRESANDQRQRLLSDISRLEAKVERLEGLLQVKDREIATITRTEAKNTAALKAQIEKLQQERDEFQRMVIGNQQVKTQQMHEMKKKEKEYIKLQERLNQVLMEKKKESRSGMEIMNLLQKEGRQRGTWNGKKADNDFYKKIVDAYESKNQELMAENADLRALLRSMQVDMRDFLNAPNGLPKQSLTGNERVESDPSQSPLVGKMDVFDLPFHMARDQIEESLRNKMASIKERMVQLQDAQKEAEVTSEATERELELEAQLVEARSIIQEQASIMSKHLAKSDRPRQYVINKAEDTHI*

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