Glyma13g00890 - SoyBase

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Report for Sequence Feature Glyma13g00890

Feature Type:	gene_model
Chromosome:	Gm13
Start:	609306
stop:	614355
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g00890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18890	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr2:8184027-8186685 FORWARD LENGTH=392	SoyBase	E_val: 3.00E-177	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF548	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_C6ZRQ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRQ1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LVQ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVQ4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g00890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g00890

Paralog	Evidence	Comments
Glyma17g06980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g00890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g097300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g00890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g00890

Limit To All Plant Sequences

>Glyma13g00890.1   sequence type=CDS   gene model=Glyma13g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTATATTCGGAGCAACAGCTTCAAGAGGCTCTTCTCATTCAGAAGACGCAGTTCAAGGGAACAGATTCTGAGTCCTAACAGTAAGGGTGAAGAAAACTATGAGATTTTTCCGCATGAAGAAGAACCTTCTCGAAGACCCTCTTGGAAGTGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGCTTCAGCTCAGAAAATTTGGTGGGAAAAGGAGGGTATGCAGAGGTTTACAAAGGAACCATGAGTGGTAGTGAGGAAATTGCTGTGAAGAGACTCACAAAAACTTCAAGGGATGAGAGAAAGGAGAAGGAATTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAACGTTTTGCCTCTTTTGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTTGAGTTATCTTCCACAGGTTCTGTTGCATCTCTTCTTCATGATGAAAGATTGCCTCCCTTAGATTGGAAAACGAGGCACAAGATAGCCATCGGAACTGCACGAGGCCTTCACTACTTGCATAAAGGTTGCAAGAGGAGGATAATCCACCGGGACATTAAGGCTTCAAACATTTTGTTAACAAAGGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAGTGGCTTCCATCTCAATGGACTCATCATTCAATTGCCCCTATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTTGTTGATGAGAAGACAGATGTGTTTGCCTTTGGTGTGTTCTTGTTAGAAGTAATCTCTGGCAGAAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGAGAGATAGAAGAGTTGGTGGATCCAAGGCTTGAGGGGGCTTATGATGTGACTCAGTTAAAAAGTTTTGCCTGCGCTGCCTCTCTTTGTATTCGGGCATCTTCAACTTGGCGACCTACCATGAGTGAGGTATTAGAGATAATGGAGGAAGGAGAGACGGATATAGAGAAGTGGAAAATGCCAGAGGAAGAAAAAGAGCAAGAAGAGGAGTTCTGGGGTTTTGAGGATCTGGAATATGAATATGACAGCTCCTTTTCAATGTCTTTACTTGACTCCATTGGAAGTACTTAA

Predicted protein sequences of Glyma13g00890

Limit To All Plant Sequences

>Glyma13g00890.1   sequence type=predicted peptide   gene model=Glyma13g00890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRYIRSNSFKRLFSFRRRSSREQILSPNSKGEENYEIFPHEEEPSRRPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGTMSGSEEIAVKRLTKTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSTGSVASLLHDERLPPLDWKTRHKIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEIEELVDPRLEGAYDVTQLKSFACAASLCIRASSTWRPTMSEVLEIMEEGETDIEKWKMPEEEKEQEEEFWGFEDLEYEYDSSFSMSLLDSIGST*

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