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Report for Sequence Feature Glyma13g00860

Feature Type:gene_model
Chromosome:Gm13
Start:586502
stop:590968
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g00860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57360AT Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr5:23241597-23244256 FORWARD LENGTH=609 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0031146GO-bp Annotation by Michelle Graham. GO Biological Process: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0043153GO-bp Annotation by Michelle Graham. GO Biological Process: entrainment of circadian clock by photoperiod SoyBaseN/AISS
GO:0044265GO-bp Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0019005GO-cc Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0009882GO-mf Annotation by Michelle Graham. GO Molecular Function: blue light photoreceptor activity SoyBaseN/AISS
KOG4693 KOG Uncharacterized conserved protein, contains kelch repeat JGI ISS
PTHR23244Panther KELCH REPEAT DOMAIN JGI ISS
PTHR23244:SF9Panther ADAGIO F-BOX PROTEIN-RELATED JGI ISS
PF00646PFAM F-box domain JGI ISS
PF00989PFAM PAS fold JGI ISS
PF01344PFAM Kelch motif JGI ISS
PF07646PFAM Kelch motif JGI ISS
UniRef100_B9MST0UniRef Annotation by Michelle Graham. Best UniRef hit: Clock-associated PAS protein ZEITLUPE 2 n=1 Tax=Glycine max RepID=B9MST0_SOYBN SoyBaseE_val: 0ISS
UniRef100_B9MST0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Clock-associated PAS protein ZEITLUPE 2 n=1 Tax=Glycine max RepID=B9MST0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g00860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g00860
ParalogEvidenceComments
Glyma17g06950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g00860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g097600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g00860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g00860
>Glyma13g00860.1   sequence type=CDS   gene model=Glyma13g00860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGGACAGCAATTCCGATCTGAGCGGGGACGAAGAGGAGGAAGGGTTCGTCTTCAACGACGGCGACGACGCTGGCCCTCTCCCGTTCCCCTTCCCCGTCGTCGAAAACCTCCTCCAAACGGCTCCCTGCGGCTTCGTCGTCACCGACGCGCACGAGCCTGACAACCCTATCATTTACGTCAACACCGTCTTCGAGATCGTCACCGGATACCGCGCCGAGGACGTTCTCGGCCGGAATTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCGTTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTGAAGAGGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCTCTGATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTACAATTAAGGAATCTGCTAAATCGTCTGATCGATTTCGTTCCGTGCTTTCCTCGTTGCAGACTCTTCCAGTGGGGGGCAGGAATGTATCTCGTGGAGTTTGTGGGATTTTTCAACTGAGTGATGAGGTACTGTCTCTCAAGATACTTGCTCAATTAACTCCTAGAGATATTGCATCAGTTAGCTCTGTCTGTAGACGATTATATGAGCTGACAAAAAACGAAGACCTCTGGAGAATGGTTTGCCAAAATGCATGGGGCAGTGAGACTACACATGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTGCTTTTTGGTGGTGAAGGGGTTAACATGCAACCCATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACACGTCCAGGTAAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACGCTTTCTTGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTCCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCCAGATCATGGCACAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGGGGATGTGCAGACTCTGGAGTTCTCTTGAGTGACACTTTCCTCCTTGATTTGTCAATGGAGAAGCCTGTCTGGAGAGAGATACCAGTGGCATGGACCCCACCATCTCGTCTGGGCCACACATTGTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGTTTTCGTTCCAGTGATGTATTCACAATGGATTTAAGTGAGGAAGAACCTTGTTGGAGATGTGTGACAGGGAGTGGCATGCCTGGTGCTGGAAATCCTGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTTGCTGTTAGTCTTCCAGGTGGGAGAATTCTAATATTTGGTGGGTCTGTTGCTGGTCTTCACTCTGCCTCTCAGCTTTACATTCTTGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGTGCCCTCCAAGATTTGCTTGGGGACACAGTACATGTGTTGTTGGAGGAACAAGAGCTATCGTACTGGGTGGTCAAACCGGGGAGGAATGGATGCTAAGCGAGCTCCATGAACTTTCCTTGGCTAGCTCTGCCATCTAA
Predicted protein sequences of Glyma13g00860
>Glyma13g00860.1   sequence type=predicted peptide   gene model=Glyma13g00860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWDSNSDLSGDEEEEGFVFNDGDDAGPLPFPFPVVENLLQTAPCGFVVTDAHEPDNPIIYVNTVFEIVTGYRAEDVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPVPGSTIKESAKSSDRFRSVLSSLQTLPVGGRNVSRGVCGIFQLSDEVLSLKILAQLTPRDIASVSSVCRRLYELTKNEDLWRMVCQNAWGSETTHVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSAI*






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