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Report for Sequence Feature Glyma13g00840

Feature Type:gene_model
Chromosome:Gm13
Start:539418
stop:548480
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g00840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30190AT Annotation by Michelle Graham. TAIR10: H(+)-ATPase 2 | chr4:14770820-14775920 REVERSE LENGTH=948 SoyBaseE_val: 0ISS
GO:0006200GO-bp Annotation by Michelle Graham. GO Biological Process: ATP catabolic process SoyBaseN/AISS
GO:0006754GO-bp Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process SoyBaseN/AISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0015991GO-bp Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0052541GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process SoyBaseN/AISS
GO:0052546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrogen-exporting ATPase activity, phosphorylative mechanism SoyBaseN/AISS
GO:0015662GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG0205 KOG Plasma membrane H+-transporting ATPase JGI ISS
PTHR24093Panther FAMILY NOT NAMED JGI ISS
PTHR24093:SF61Panther SUBFAMILY NOT NAMED JGI ISS
PF00122PFAM E1-E2 ATPase JGI ISS
PF00690PFAM Cation transporter/ATPase, N-terminus JGI ISS
PF00702PFAM haloacid dehalogenase-like hydrolase JGI ISS
UniRef100_Q9SAW3UniRef Annotation by Michelle Graham. Most informative UniRef hit: P-type H+-ATPase n=1 Tax=Vicia faba RepID=Q9SAW3_VICFA SoyBaseE_val: 0ISS
UniRef100_UPI000233E4DDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E4DD related cluster n=1 Tax=unknown RepID=UPI000233E4DD SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g00840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g00840
ParalogEvidenceComments
Glyma17g06930 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g00840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g097900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g00840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g00840
>Glyma13g00840.1   sequence type=CDS   gene model=Glyma13g00840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTGACAAGGCAGCAATCAGCCTCGAGGAAATCAAGAATGAGACCGTTGATCTGGAACGCATTCCTATTGAGGAAGTGTTTCAGCAATTGAAATGTACCAGAGAAGGATTGTCCTCGGACGAAGGAGCCAATCGGCTTCAAATATTTGGGCCAAACAAGCTAGAGGAGAAAAAGGAAAGTAAATTTCTCAAGTTTCTTGGGTTCATGTGGAATCCTCTGTCATGGGTCATGGAAGCTGCAGCTGTTATGGCAATTGCTCTTGCAAATGGGGATGGGAAGCCCCCAGATTGGCAAGATTTTGTGGGTATTGTTTGCTTGTTGGTGATCAACTCCACCATCAGTTTCATTGAAGAAAATAATGCTGGTAATGCAGCTGCTGCTCTTATGGCTGGTCTTGCTCCCAAGACAAAGGTCCTTAGAGATGGTAAATGGACTGAGGAAGAAGCGGCTATTCTAGTTCCTGGAGACATCATAAGCATCAAACTAGGAGATATCATTCCTGCTGATGCTCGTCTTCTTGAGGGTGATCCTTTGAAGGTTGATCAATCCGCTTTGACAGGAGAGTCACTTCCTGTAACCAGGGGTCCTGGAGAAGAAGTTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACATTTTTCGGCAAAGCAGCTCACCTGGTGGATAGTACCAACCAAGTTGGACATTTCCAGAAAGTGCTTACAGCAATTGGAAACTTCTGTATTTGTTCCATTGCAGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCAATTCAGCACCGTAAGTACAGAGATGGAATTGACAACCTTTTGGTCCTCTTGATTGGAGGAATTCCCATTGCTATGCCCACTGTGTTGTCTGTGACAATGGCCATTGGTTCTCATAGGCTCTCTCAGCAGGGTGCTATAACCAAGAGAATGACTGCCATTGAAGAAATGGCTGGTATGGATGTCCTTTGCAGCGACAAGACAGGTACACTCACACTTAACAAGCTGAGTGTTGACAAGAATTTGATTGAGGTCTTCGCAAAGGGTGTGGAAAAGGATCATGTGATCCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCAATAGATGCTGCCATTGTTGGAATGCTTGCCGATCCAAAAGAGGCAAGGGCTGGGGTAAGAGAGGTGCACTTCTTACCATTTAATCCTGTCGACAAGAGAACTGCTTTGACTTACATTGATGCTGATGGAAATTGGCACCGGGCAAGCAAAGGTGCTCCCGAGCAGATCATGACCTTGTGTAACCTCAGGGATGATGCAAAGAGGAAGGTCCATGCTATTATTGATAAGTTTGCAGAGAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAAGAAAGCGCTGGTGCTCCATGGCAGTTTGTTGGTTTGTTGTCACTGTTCGACCCCCCTAGACATGACAGTGCTGAAACTATTCCTAGAGCTCTCCATCTTGGTGTAAATGTCAAGATGATACTGGGAAGTATCCAGGAGACCGGCCGAAGACTGGGGATGGGAACTAATATGTACCCATCTGCTTCTTTGCTTGGTCAAGACAAAGATGCAAGTATTGCTGCACTTCCAGTAGAAGAGCTGATTGAGAAGGCAGATGGTTTTGCTGGAGTATTTCCAGAACACAAATATGAAATTGTAAAGAAGTTGCAAGAGAGGAAGCACATCTGTGGAATGACTGGAGATGGTGTTAATGACGCTCCGGCTTTGAAGAAGGCTGATATTGGAATCGCTGTTGCTGATGCAACTGATGCTGCCAGAAGTGCTTCTGATATTGTCTTGACAGAACCTGGTTTGAGTGTTATTATTAGTGCAGTCTTAACTAGCAGGGCTATTTTCCAGAGAATGAAAAACTACACGATATATGCAGTATCTATTACTATCCGTATAGTGTTTGGCTTCATGTTCATAGCACTGATATGGAAATTTGACTTCTCTCCTTTTATGGTTTTGATCATTGCTATTCTGAATGATGGAACAATCATGACAATTTCAAAGGACAGGGTGAAGCCATCTCCCTTGCCTGATAGCTGGAAACTGCAAGAAATATTTGCTACTGGGATTGTACTTGGAAGTTACTTGGCGCTGATGACTGTCATATTCTTCTGGGCAATGAAAGAAACCGATTTCTTCCCTGACAAATTTGGAGTTAGACACTTGAGTCATGATGAGATGATGTCTGCTTTGTATTTACAAGTCAGTATAGTCAGCCAGGCTTTGATATTTGTAACCCGTTCTCGAAGCTGGTCCTTTATTGAACGCCCTGGAATGCTGTTAGTTTGCGCTTTCGTTATTGCTCAGCTGATTGCTACAATCATAGCAGTATATGCTGACTGGGGCTTTGCAAAGGTGAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATCTGGCTCTACAGTATTGTCTTCTATATTCCACTTGATGTCATGAAGTTTGCCACCCGTTATGTATTGAGTGGCAAGGCTTGGGTAAACATGCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTACGGTAAGGAGGAGAGGGAAGCTCAATGGGCTCATGCTCAGAGAACCCTGCATGGACTTCAACCACCAGAAACTTCTGGCATTTTCAATGAGAAGAACAGTTATAGAGAACTCTCTGAGATTGCTGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTTCACACACTGAAGGGACATGTTGAGTCTGTGGTGAAGCTGAAGGGTTTGGACATTGATACAATCCAGCAGCACTACACGGTGTGA
Predicted protein sequences of Glyma13g00840
>Glyma13g00840.1   sequence type=predicted peptide   gene model=Glyma13g00840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAADKAAISLEEIKNETVDLERIPIEEVFQQLKCTREGLSSDEGANRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAVMAIALANGDGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEEEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTRGPGEEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDHVILLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDADGNWHRASKGAPEQIMTLCNLRDDAKRKVHAIIDKFAERGLRSLAVARQEVPEKTKESAGAPWQFVGLLSLFDPPRHDSAETIPRALHLGVNVKMILGSIQETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLQEIFATGIVLGSYLALMTVIFFWAMKETDFFPDKFGVRHLSHDEMMSALYLQVSIVSQALIFVTRSRSWSFIERPGMLLVCAFVIAQLIATIIAVYADWGFAKVKGIGWGWAGVIWLYSIVFYIPLDVMKFATRYVLSGKAWVNMLENKTAFTTKKDYGKEEREAQWAHAQRTLHGLQPPETSGIFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV*






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