SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g00820

Feature Type:gene_model
Chromosome:Gm13
Start:526075
stop:528321
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g00820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57345AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23229562-23230587 REVERSE LENGTH=188 SoyBaseE_val: 7.00E-58ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07466PFAM Protein of unknown function (DUF1517) JGI ISS
UniRef100_C6T189UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T189_SOYBN SoyBaseE_val: 4.00E-134ISS

Expression Patterns of Glyma13g00820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g00820
ParalogEvidenceComments
Glyma17g06910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g00820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g098100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g00820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g00820
>Glyma13g00820.1   sequence type=CDS   gene model=Glyma13g00820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAGCATCGCTTCCTCACACCAAAGCTTCCTCACCAACGCCCTTATTCCACTAACGCACAACCCAAAGTTCAGGACCACTGTTACTTTCCCTTCTTCACTCAAAACTGTCTCTTGCAGTTCCCCACAACATGAACAGCAACAATCTCCAAGGAAGAAGAATGAGAACAAGTTAGCAAAGTTGGCAATAGTTGCACTTGCTGCTGGTGTGTTAACACTTGGGTCAGTTCATGATGCATCAGCCGCCAAGACTGGTGGTAGAATCGGGGGCCAGGCCTTCAAGTCAGCAGCTCCGCGCTCCTCACCAAGAATCAACAATTCCAGAACCAATATCTATATTAATCCTCGAGTGGCACCTCCGCTAGTTGGTGGCTATGGCTATGGTTATGGTGTGCCATTTTACGGTGGCTGGGGATGGTCTCCATTTTCATTCTTTGCACCAGGTCCCAGTGTAGCTGTAGGCGTTGGAGGTGGATTTGACACTATTCTTCTGTTTATGTTTCTTGGTGCTGCCGCTGCAGTTGTGAGGAGATTCTTTGGGTCAAGAAATGAAGATGATGACTACTAG
Predicted protein sequences of Glyma13g00820
>Glyma13g00820.1   sequence type=predicted peptide   gene model=Glyma13g00820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIASSHQSFLTNALIPLTHNPKFRTTVTFPSSLKTVSCSSPQHEQQQSPRKKNENKLAKLAIVALAAGVLTLGSVHDASAAKTGGRIGGQAFKSAAPRSSPRINNSRTNIYINPRVAPPLVGGYGYGYGVPFYGGWGWSPFSFFAPGPSVAVGVGGGFDTILLFMFLGAAAAVVRRFFGSRNEDDDY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo