SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04390 | AT | Annotation by Michelle Graham. TAIR10: BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849 | SoyBase | E_val: 1.00E-33 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009954 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proximal/distal pattern formation | SoyBase | N/A | ISS |
| GO:0010227 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ abscission | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| UniRef100_D7KDE0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F19P19.16 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KDE0_ARALL | SoyBase | E_val: 5.00E-34 | ISS |
| UniRef100_I1LVN7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVN7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g00720 not represented in the dataset |
Glyma13g00720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g00720.2 sequence type=transcript gene model=Glyma13g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATCCGACAGAGAGAAGGAGAAAGAGAAAGAGAATGATCACTGCATCAGTTCTCATATGCAGACCCTTCATCGCCGTCTTCTCCACGCCTTAAACCTTGGCACCAGATCTCAACTTGCACCCCCATCCCACCCAGTCACTTCCCTCCAGATGGAAAAATGTGCTATGATCAATTGGTGCGCTCTTGATTCATTATCAGGAGATGCACATGCAGCACGTCATGCTATTGTTAAGACGAAAGAATTTCCTAAGGGGCCATTTGGTTTGAGATTTCACCTTGTTCCCTGTTTTCTGATGTATATACAAGAAAAAGTGAAAATAGAAAACAATAAAAAGTCATTTTTTACTAAAATATTTTCTCAAGGCAAACATATACTTTTTGAAACTGGAACCTGTTGCCGATATTTTGGGAGCGCATTATTATGGGTTCTTCAATGCAAAAGTGAGGCTTTGTTAAGCATGGCATCAGATGTGGCAGTAAAGGTAATTAGTTTTATACCCAATTCATTATTGCAATTCCATATGTTGGATCTTGTCTATTGTCTGTCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCAACACCCTGTGCTAATGCTTTGAATTTGGTAATCTCAAATTTGAGTGCTACAAGTGAGAAGGCAGTTATGGAAGCTTTGAAAGAAACAGAGACTTCCATGCGTATTGTTGGAAATAGAAAAGATTTTGCTGAAGGTGCAAAAAAAATTGAATATTTTGAAGAGACGACTTTGCTTTTGAGCACAATACTGTGGCGCTGGCCTCCTTCTAGGTTGCCTGTTGGAAATGATGTTATACTTATGAAAGTCTTAGCAAACATCCATACAAGGACAGATAGTTCTATTAAACTTACACTTTTAAAGCTGTACACATCTTTATGTATTAAACTTTTTCCTTATTATCACCCATTCTCAAGTATTTACGCTAACTAACTTCTATTTTGTTACCAGCTTTATGTGATTCTGTAGCTAGAAAACGTATAGAGGATGGAGAAGTATTTCCACAAATGTTTGTGCAGGCGATGGGAAAATCAGACCCCCATGCTGTTCGAATAGAGGGGTTTAGGCTTGCTCAATGTCTATTGAGATCCCAAGAGAATTGTTTAAAAGTGGTTGGTTTGTGTGGTGAAGCTCTTGTTGATGCAATAATTTGTGGGATGAAAGAAACTGGGCTGAGTTCTAAATAAATTGGGAACAACCATGGGTCTTTGTCAGGGGAAGCATGCCAGTCGGCTCTAATTACTCGCTGGGCGGGTGATCATCATATCAAGTTTTGGAAACAAGGAATTGATAGAATTCTCCTTAATCCTCCTGATTGAAAATATTCAAGACAAATTGTCTAAACCTGTCTTGTCATTGAAAAAACAAATATCCATGGTAAAAGAGGGATTAAAAGCCAATTATCATCTTGGTCTTGGGAGTTATCTATGAGACATTCTTGGGTGGCTTACTATTCACTGTGGAGAAAATTTAAACCCTCATACTCATGGAAGTGAGCTCTGCATCAACTTACTAATTACATGTGCATTGTAAATTGTATTCTTTCCATTATAATTTCTTGATGGATTTATCATGTGTATACATGTTGATGTTATAGTATATATCCTATGCCTCAGTTTCTTACTAATACTGTTGAATGTTGATTATATTTCTGAACTTTTATA
>Glyma13g00720.1 sequence type=CDS gene model=Glyma13g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATCCGACAGAGAGAAGGAGAAAGAGAAAGAGAATGATCACTGCATCAGTTCTCATATGCAGACCCTTCATCGCCGTCTTCTCCACGCCTTAAACCTTGGCACCAGATCTCAACTTGCACCCCCATCCCACCCAGTCACTTCCCTCCAGATGGAAAAATGTGCTATGATCAATTGGTGCGCTCTTGATTCATTATCAGGAGATGCACATGCAGCACGTCATGCTATTGTTAAGACGAAAGAATTTCCTAAGGGGCCATTTGGTTTGAGATTTCACCTTGTTCCCTGTTTTCTGATGTATATACAAGAAAAAGTGAAAATAGAAAACAATAAAAAGTCATTTTTTACTAAAATATTTTCTCAAGGCAAACATATACTTTTTGAAACTGGAACCTGTTGCCGATATTTTGGGAGCGCATTATTATGGGTTCTTCAATGCAAAAGTGAGGCTTTGTTAAGCATGGCATCAGATGTGGCAGTAAAGGTAATTAGTTTTATACCCAATTCATTATTGCAATTCCATATGTTGGATCTTGTCTATTGTCTGTCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCAACACCCTGTGCTAATGCTTTGAATTTGGTAATCTCAAATTTGAGTGCTACAAGTGAGAAGGCAGTTATGGAAGCTTTGAAAGAAACAGAGACTTCCATGCGTATTGTTGGAAATAGAAAAGATTTTGCTGAAGGTGCAAAAAAAATTGAATATTTTGAAGAGACGACTTTGCTTTTGAGCACAATACTGTGGCGCTGGCCTCCTTCTAGGTTGCCTGTTGGAAATGATGTTATACTTATGAAAGTCTTAGCAAACATCCATACAAGGACAGATAGTTCTATTAAACTTACACTTTTAAAGCTGTACACATCTTTATGTATTAAACTTTTTCCTTATTATCACCCATTCTCAAGTATTTACGCTAACTAA >Glyma13g00720.2 sequence type=CDS gene model=Glyma13g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATCCGACAGAGAGAAGGAGAAAGAGAAAGAGAATGATCACTGCATCAGTTCTCATATGCAGACCCTTCATCGCCGTCTTCTCCACGCCTTAAACCTTGGCACCAGATCTCAACTTGCACCCCCATCCCACCCAGTCACTTCCCTCCAGATGGAAAAATGTGCTATGATCAATTGGTGCGCTCTTGATTCATTATCAGGAGATGCACATGCAGCACGTCATGCTATTGTTAAGACGAAAGAATTTCCTAAGGGGCCATTTGGTTTGAGATTTCACCTTGTTCCCTGTTTTCTGATGTATATACAAGAAAAAGTGAAAATAGAAAACAATAAAAAGTCATTTTTTACTAAAATATTTTCTCAAGGCAAACATATACTTTTTGAAACTGGAACCTGTTGCCGATATTTTGGGAGCGCATTATTATGGGTTCTTCAATGCAAAAGTGAGGCTTTGTTAAGCATGGCATCAGATGTGGCAGTAAAGGTAATTAGTTTTATACCCAATTCATTATTGCAATTCCATATGTTGGATCTTGTCTATTGTCTGTCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCAACACCCTGTGCTAATGCTTTGAATTTGGTAATCTCAAATTTGAGTGCTACAAGTGAGAAGGCAGTTATGGAAGCTTTGAAAGAAACAGAGACTTCCATGCGTATTGTTGGAAATAGAAAAGATTTTGCTGAAGGTGCAAAAAAAATTGAATATTTTGAAGAGACGACTTTGCTTTTGAGCACAATACTGTGGCGCTGGCCTCCTTCTAGGTTGCCTGTTGGAAATGATGTTATACTTATGAAAGTCTTAGCAAACATCCATACAAGGACAGATAGTTCTATTAAACTTACACTTTTAAAGCTGTACACATCTTTATGTATTAAACTTTTTCCTTATTATCACCCATTCTCAAGTATTTACGCTAACTAA
>Glyma13g00720.1 sequence type=predicted peptide gene model=Glyma13g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSDREKEKEKENDHCISSHMQTLHRRLLHALNLGTRSQLAPPSHPVTSLQMEKCAMINWCALDSLSGDAHAARHAIVKTKEFPKGPFGLRFHLVPCFLMYIQEKVKIENNKKSFFTKIFSQGKHILFETGTCCRYFGSALLWVLQCKSEALLSMASDVAVKVISFIPNSLLQFHMLDLVYCLSSLLSSHQVEVATPCANALNLVISNLSATSEKAVMEALKETETSMRIVGNRKDFAEGAKKIEYFEETTLLLSTILWRWPPSRLPVGNDVILMKVLANIHTRTDSSIKLTLLKLYTSLCIKLFPYYHPFSSIYAN* >Glyma13g00720.2 sequence type=predicted peptide gene model=Glyma13g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSDREKEKEKENDHCISSHMQTLHRRLLHALNLGTRSQLAPPSHPVTSLQMEKCAMINWCALDSLSGDAHAARHAIVKTKEFPKGPFGLRFHLVPCFLMYIQEKVKIENNKKSFFTKIFSQGKHILFETGTCCRYFGSALLWVLQCKSEALLSMASDVAVKVISFIPNSLLQFHMLDLVYCLSSLLSSHQVEVATPCANALNLVISNLSATSEKAVMEALKETETSMRIVGNRKDFAEGAKKIEYFEETTLLLSTILWRWPPSRLPVGNDVILMKVLANIHTRTDSSIKLTLLKLYTSLCIKLFPYYHPFSSIYAN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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