SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19080 | AT | Annotation by Michelle Graham. TAIR10: metaxin-related | chr2:8262818-8264746 FORWARD LENGTH=315 | SoyBase | E_val: 8.00E-93 | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005741 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial outer membrane | SoyBase | N/A | ISS |
| GO:0005743 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3028 | KOG | Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 | JGI | ISS | |
| PTHR12289 | Panther | METAXIN | JGI | ISS | |
| PTHR12289:SF9 | Panther | gb def: Expressed protein (At2g19080/T20K24.9) (Hypothetical protein) | JGI | ISS | |
| UniRef100_G7JUC4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Metaxin-1 n=1 Tax=Medicago truncatula RepID=G7JUC4_MEDTR | SoyBase | E_val: 3.00E-158 | ISS |
| UniRef100_I1LVN3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVN3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g00660 not represented in the dataset |
Glyma13g00660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g06820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g099400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g00660.1 sequence type=CDS gene model=Glyma13g00660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGAAGTTAACACTCTGGTGGTGCGGAAGCCCTGTTTTGGTCTTCCAACCGGTTGCCCTCAATGCCTATCTGCTTACATCTATCTCAAATTCGCTCAATTTCCATTCCAATTGGACTTCCACCTCAACAACCCTCATTCTGATCAAATCCCTTACTTTGAAGTTGGTGACTATGTGGCTTATAACAATGAGAAAGAGGGGATTATTGAGTGTTTGAAGAAAGATGTTGGGGTTGTTGATTTGGATAGTGGGGTTTCTTCACTCCCTGAGTGGATTTCAACTAAAGCAATTCTCACCACTTGGCTTGCTGATGCACTTACCTATGAACTCTGGCTGGGATGTGAAGGCTCCTCTGCTTATAGTATCTATTACCCTGATCTTCCATGGCCATTGGGGAAGATTCTCTCTTGGAAGAAAGCTCATTGGGTGAAGCTGAAACATGGGATAACTAATGACAATGCTGAGGTGAAGAAAGAAGAGATTTATGAGAGAGCAAAGTCTGCATATGATGCCTTGTCAAGTTGCTTAGGTGAACAGAATTACTTATTTGAGAACAGGCCATCAAGCTTGGATGCTATTTTTCTTGCACATGGACTAGTTGTTCTTCATGCTTTACCTGAATCTTCAATGTTGCGAATCAAGTTTTCAGAGCATGCTCATTTAGTCAGATATGTGCAACAATGCAAAACAGAATTTATAGAAGCAGCTCCATCTCCTTCCTCTGCCCCACGATTTCATACTGGTGCATCATCGTCTGCTTCTAAAAGTCATTCAAGTTCAAAGCCGAAGAGTAAGCCCAAAAGGGAGAAAACACAGGAGGAGAAAACCTTCAAAAGGAAGGCAAAATATTTTGTGGTAGCACAGTTGGTTGCAGTTGTTGTGTTCCTCACACTTATGACTTCATTTGATGATGCTGAAGTGGAGTTAGATGATGATGGTGGTTATGATTTCGATGAATGA
>Glyma13g00660.1 sequence type=predicted peptide gene model=Glyma13g00660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEVNTLVVRKPCFGLPTGCPQCLSAYIYLKFAQFPFQLDFHLNNPHSDQIPYFEVGDYVAYNNEKEGIIECLKKDVGVVDLDSGVSSLPEWISTKAILTTWLADALTYELWLGCEGSSAYSIYYPDLPWPLGKILSWKKAHWVKLKHGITNDNAEVKKEEIYERAKSAYDALSSCLGEQNYLFENRPSSLDAIFLAHGLVVLHALPESSMLRIKFSEHAHLVRYVQQCKTEFIEAAPSPSSAPRFHTGASSSASKSHSSSKPKSKPKREKTQEEKTFKRKAKYFVVAQLVAVVVFLTLMTSFDDAEVELDDDGGYDFDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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