Glyma13g00650 - SoyBase

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Report for Sequence Feature Glyma13g00650

Feature Type:	gene_model
Chromosome:	Gm13
Start:	408959
stop:	413951
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g00650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30130	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) \| chr4:14735401-14737793 FORWARD LENGTH=725	SoyBase	E_val: 0	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0007267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell signaling	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009886	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0048507	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem development	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21450	Panther	UNCHARACTERIZED	JGI		ISS
PF04782	PFAM	Protein of unknown function (DUF632)	JGI		ISS
PF04783	PFAM	Protein of unknown function (DUF630)	JGI		ISS
UniRef100_G7JUC3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bZIP106 n=1 Tax=Medicago truncatula RepID=G7JUC3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LVN2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVN2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g00650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g00650

Paralog	Evidence	Comments
Glyma17g06810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g00650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g099500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g00650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g00650

Limit To All Plant Sequences

>Glyma13g00650.1   sequence type=CDS   gene model=Glyma13g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATGTTCTCAATCAAAGTTGGATGATGAAGAGGCAGTTAAGCTTTGCAAAGATAGAAAGCGATTCATCAAACAGGCTGTTGAGCAAAGAACTCAATTTGCTACTGGACATGCAGCATACATTCAGTCTTTGAAAAGGGTTTCAGCGGCACTGCTAGATTACTTGGAAGGCGATGAGTCGCGCCAGTTGCCATTGGATTCATTCATAACCCCACCTTTCACTCCTGTGAAGAAAACTAGTCGTCCTGCTTTCATCCCCATATCATCAAAATCCTTCACCCCAACAACAATTGAGTTTGGTCCCAAGACAACTTTGAAGGTGAATTACCTAAGGCCGAGTGGTAATCCAGCGATTTCTGTTGAGGAAAGGCCTCAATCGCCTGAGATGGTTCGGGTTGAAATGCATTCTCCAATGCATCAGTTTGGCATTGAGGGTTTTTTTCCTATGCAATCCTCACCCGTGAATCCCTCAATTTTTGCTTATTCTCCCAATAACAGGCCTAATATCCCTCCACCTTCACCTCAATCTTCCCAATGGGATTCCTTTTGGAATCCATTTTCATCATTGGACTATTATGGTTACCCCGCCCAAAGTAGCCTTGATAGGACTGGAACTGATGATGAGATCAGAGGACTGAGGAAGGTTCGAGAAGAAGAAGGAATACCAGACCTGGAAGAAGATGAAACTGAACAAGAAGAATTTGCTATAAAGAGAAATGTAGCAGAAGAAAGAGCCAAAATTGATGTAAACCCCTCCAAAGAAGAAGTCGCAGTTGAAGATGTTTATGAACATGAGGAGGAAGAGGAAGAGGAGGCAACAGGTGCTGAAACTGGAATTGCAAATGAAGTCTCAGACTCACAAGCCAATGGCAGTGAATGTTTTCAAGCATCTAAAGCTCAAACTGTGGGCCAGGAAATGGCAACTGGTAATCAAGAAGCAAAGGAGGAAACACCTGGTTTTACTGTTTATGTAAACCGAAGGCCCACAAGCATGGTTGAAGTGATCAAGGATCTTGAAGCTCAATTCACAATAATCTGCAATGCAGCCAATGATGTCTCAGCATTGTTAGAGGCCAAGAAAGCTCAGTATTTATCAACATCTAACGAACTGTCAGCTTCAAAATTGTTGAACCCAGTGGCACTTTTCCGATCAGCTTCATCACACTCATCCTCATCAAGATTTTTAATGAATTCTTCAAACTCTAGGGATGAGGATTACGAAGGCACCAATGATCCATCAGAGGAACATTGTTTGTTTTCTGTTAGTCATCAGTCAACATTAGACAGGTTATATGAATGGGAGAAGAAGCTCTACGAGGAAGTTAAGTCTGGAGAACGTGTTCGAATTGCATATGAGAAGAAATGCCAGCAACTCAGGAATCATGATGTAAATGGAGAGGAACCTTCTTCTCTTGATAAAACAAGAGCGGCCATGAGAGATCTACATACCCAGATAACAGTTTCAATACACTCAGTTGAAGCTATTTCCGGGAGAATTGAAACTCTAAGGGATGAAGAGTTGCATCCCCAGCTTCTTGAATTGGTGCAAGGGCTGGCCAAGATGTGGAAAGTGATGGCAGAATGTCATCAGACACAGAAGAGAACCTTAGATGAAGCCAAGATTCTTCTAGTTGACACTGATGCCCGAAAACAATGTGCCACATCACTAACTGATCCTCAAAGGCTTGCTCGTTCTGCCTCCAATCTTGAAAATGAATTGAGGCATTGGCGAAACACCTTTGAGTCTTGGATCACTTCTCAAAGATCCTATATTCATGCTCTAACTGGCTGGCTTCTAAGATGTGTGAGATGTGAGCATGATCCATCAAAGTTAGCATGCTCTCCTCGTAGGTCCAGTGGTACTCATCCATTATTTGGACTTTGTGTTCAGTGGTCAAGACGTCTAGACGCCCTCCAAGAAACAGCAGTGCTTGATGGCATAGACTTTTTTGCAGCTGGCATAGGGTCCCTCTATGCACAACAATTAAGAGAAGAGACTCGACGAAATCCAGATGGATCAAAAGAACATGGTGAGATTATGGAAATGCTGGAAGTTGGTCAGGTTGAAGAGGTAATGAATACTGAGAAATTGGCTGAAGTTGCTATTAAGGTGCTTTGTGCTGGTATGTCAACTGCTATGAGGTCAATGGCAGAGTTTGCTGTTGATTATGCTGAGGGATACAATGAACTTGCTAAGAGATGGGAGAATGTGAACCTGCAGCAGATTTCTTGTGGGGCTGGAACATAG

Predicted protein sequences of Glyma13g00650

Limit To All Plant Sequences

>Glyma13g00650.1   sequence type=predicted peptide   gene model=Glyma13g00650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCSQSKLDDEEAVKLCKDRKRFIKQAVEQRTQFATGHAAYIQSLKRVSAALLDYLEGDESRQLPLDSFITPPFTPVKKTSRPAFIPISSKSFTPTTIEFGPKTTLKVNYLRPSGNPAISVEERPQSPEMVRVEMHSPMHQFGIEGFFPMQSSPVNPSIFAYSPNNRPNIPPPSPQSSQWDSFWNPFSSLDYYGYPAQSSLDRTGTDDEIRGLRKVREEEGIPDLEEDETEQEEFAIKRNVAEERAKIDVNPSKEEVAVEDVYEHEEEEEEEATGAETGIANEVSDSQANGSECFQASKAQTVGQEMATGNQEAKEETPGFTVYVNRRPTSMVEVIKDLEAQFTIICNAANDVSALLEAKKAQYLSTSNELSASKLLNPVALFRSASSHSSSSRFLMNSSNSRDEDYEGTNDPSEEHCLFSVSHQSTLDRLYEWEKKLYEEVKSGERVRIAYEKKCQQLRNHDVNGEEPSSLDKTRAAMRDLHTQITVSIHSVEAISGRIETLRDEELHPQLLELVQGLAKMWKVMAECHQTQKRTLDEAKILLVDTDARKQCATSLTDPQRLARSASNLENELRHWRNTFESWITSQRSYIHALTGWLLRCVRCEHDPSKLACSPRRSSGTHPLFGLCVQWSRRLDALQETAVLDGIDFFAAGIGSLYAQQLREETRRNPDGSKEHGEIMEMLEVGQVEEVMNTEKLAEVAIKVLCAGMSTAMRSMAEFAVDYAEGYNELAKRWENVNLQQISCGAGT*

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