Report for Sequence Feature Glyma13g00630
Feature Type: gene_model
Chromosome: Gm13
Start: 372678
stop: 383064
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g00630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G30110 AT
Annotation by Michelle Graham. TAIR10: heavy metal atpase 2 | chr4:14720253-14724577 REVERSE LENGTH=951
SoyBase E_val: 0 ISS
GO:0006754 GO-bp
Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process
SoyBase N/A ISS
GO:0006812 GO-bp
Annotation by Michelle Graham. GO Biological Process: cation transport
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0030001 GO-bp
Annotation by Michelle Graham. GO Biological Process: metal ion transport
SoyBase N/A ISS
GO:0055069 GO-bp
Annotation by Michelle Graham. GO Biological Process: zinc ion homeostasis
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0015434 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cadmium-transporting ATPase activity
SoyBase N/A ISS
GO:0015662 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
SoyBase N/A ISS
GO:0016818 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
SoyBase N/A ISS
GO:0046872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion binding
SoyBase N/A ISS
GO:0046873 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity
SoyBase N/A ISS
KOG0207
KOG
Cation transport ATPase
JGI ISS
PTHR24093 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24093:SF31 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00122 PFAM
E1-E2 ATPase
JGI ISS
PF00702 PFAM
haloacid dehalogenase-like hydrolase
JGI ISS
UniRef100_G7JUC1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zn/Cd P(IB)-type ATPase n=1 Tax=Medicago truncatula RepID=G7JUC1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233B986 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B986 related cluster n=1 Tax=unknown RepID=UPI000233B986
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g00630
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g00630
Paralog Evidence Comments
Glyma17g06800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g00630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g099600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g00630
Coding sequences of Glyma13g00630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g00630.2 sequence type=CDS gene model=Glyma13g00630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATAAGGCAGAGAAAGCTGTGCAGAAGAGCTACTTTGATGTATTGGGTTTGTGCTGTTCCTCGGAGGTTCCTCTTATTGAAAACATCTTGAAACCTCTCGAAGGAATCAAAGAAGTTTCAGTCATCGTTCCATCACGAACTGTCATTGTTGTCCATGACACTCTTGTCATTTCGCAACTTCAAATTGTGAAGGCACTGAATCAAGCAAGGCTAGAAGCAAATATCAGAGTGTATGGGGACGAAAAGCACCAAAAGAGATGGCCAAGCCCTTACTCAATTGCCTCTGGTGTGTTACTTTTGCTTTCTCTCCTCAAATTTGTGTTCCATCCCTTAAAATATTTGGCACTAGGAGCGGTTGCTGTGGGTGCCTACCCAATCATCTTAAAGGCCATTGTCTCCATTCGGAACCTTAGGCTGGACATCAACATTCTTATGCTTATAGCAGTTATTGGGACAATTGTTATGAATGATTATTTGGAAGCAGGCACCATTGTTTTCCTCTTCTCAATTGCAGAATGGCTAGAGTCAAGGGCAAGTCATAAGGCAAATGCAGTAATGTCATCGTTGATGAACATAACCCCTCAAAAAGCAGTCATAGCTGAAACAGGAGAGGTTGTGGACGCTGATGAGGTGAAAATAGACACTGTTTTAGCAGTTAAAGCAGGCGAGGTGATACCCATTGATGGAGTTGTTTTAGATGGAACCTGTGAAGTTGATGAGAAAACTTTGACTGGGGAATCATTCCCTGTGGCAAAACAAAAGGATTCTACTGTATGGGCTGGCACCATCAATTTAAATGGTTATATTAGTGTGAAAACTACTGCACTAGCTGAGGATTGTGTGGTGGCTAAAATGGCCAAGCTTGTTGAAGAAGCTCAAAACAGCAAAACCAGCATTCAGAGATTGATTGACAAGTTTGCCAAGTTTTATACCCCAGGCGTTGTAATCATATCAGCTCTTGTAGCGGTGATTCCACTTGCGTTAAAACAACATAATGAGAAACATTGGCTTCATTTTGCACTGGTTGTTTTAGTAAGTGCATGTCCATGTGCACTCATCCTTTCAACGCCAGTTGCAACTTTTTGTGCTTACTCCAAAGCAGCCACATCAGGTCTTCTCATCAAAGGGGGTGATCATCTTGAAACACTTGCAAAAATTAAGGTCATGGCCTTTGACAAAACGGGTACCATAACGAAGGGTGAATTTGTGGTCACACATTTTCAATCTCTTTCAGATGACATTGATTTGAACACATTGGCTTACTGGGTGTCAAGCATAGAGAGCAAGTCAAGCCATCCATTGGCAGCAGCAATTGTTGATTATGGAAGGTCTCTCTCCGTTGAACCAGAGCCAGAAAAGGTGACTGAATTTGAAAATTTCCCTGGAGAAGGAATATGTGGTAAAATTGAAGGCAGAGTTATTTACATTGGAAATAAAAAAATTGCCACAAGAGCTGGTTCTGAAACAGTTCCTATCTTACAAGGTGAAATTGAAAGAGGAAAGACCACTGGATACATATACTTGGGAGCAACCCCACTTGGATTTTTCTCTCTTTCAGATACCTGCAGATTAGGGGTTCAGGAGGCAATAGGGCAGTTGAAGTCATTGGGAATCAAAACCGCTATGCTCACTGGAGATAGTCAATCTGCTGCAATGCAAGCACAGGAGCAGCTGGGGCATTCTCTGGAGTTAGTCCATGCAGAACTTTTGCCAGAGGACAAGGTCAAAATCATCTCAGAATTTAAGAAGGAAGGCCCAACAGCCATGATTGGAGACGGCCTAAACGACGCGCCGGCATTAGCTGCAGCTGATATTGGAATCTCAATGGGCATTTCAGGTTCTGCATTGGCAAGTGAGACAGGCAATATAATTCTTATGTCAAATGACATTAGGAAGATACCAGAAGCCATTAAACTTGCAAGAAAAGCTCGTAGGAAAGTGTTAGAAAACATTGTTTTGTCAATCATGACTAAGGCTGCGATTCTTGGTTTGGCCATTGGTGGTCATCCACTTGTTTGGGCAGCAGTTGTGGCTGATGTTGGAACATGTCTATTGGTCATCTTTAACAGCATGTTACTTCTGCGAAAAGGACACAACCATGGAGGAAAATGTTGTAGATCTTCTACTAAACCACATAACCACAAAAATGGATGTGGTGGCAGTCATGGTAGTTCCTCTCATCATCACCATCATCATGAGCATGATCAACAACATCAACATGAGCATCATAGCCACAAGCATTGTTGCTCAGACAAGACAAAAAAGATGTCCCAACCTCAGAAATGTGGTGGTGCTCATGGTAGTTCCTCTCATCATCATCACCATCAACATCAACATGAACAACATAACCATGACCAACACGATCAACATGAACATCATAATCATGACCAACTCGATCAACGTGAACATCATGGACATAGTCAACATGATCAACATCATCAGAAGTGTGCCTCACAAACATGTTCCTCAACATGTCCACCCTGCTCTTCAAATTCAAGTTTTGGTGGAATTGTTAACCATTGTAACACCATGAAGGCTCATGATCAATGTAAAGGAAGTGATGAATTCCATGAACATGATCACTGTCATCATGGAAGATGTGACAAGAATCACGATGAAGTCCACAAGCATGACACCGAAGATAATCATGCAGTTGCAGAAAAAAGGCATGGTAGTTGTTTGGGACATAAGAACCATGGGACAAAGCACTGCCACAACCAAAATCTTGACAAGGTTACTCATGATAGTGCTTCACATAGTTCTCCTTGCCACCTCAATCTCCCTTGTAAAAAAGAAAGCCAACAATTTACTCATAATCATTGCCACCTGATCCATGGTTGTGAAAATCTGAAAGACCATGAATCCAAAGATGTTTTAAGATCCAACCATGACATCCAGCATGAAAAATCAGGTTGTCATTCTGATTTTGAGAAGCATGAGACAGGTGAAATATCCATTGACATCATCACTGAGTATGTTGAATTAGCTTCAAGTTTGGAGGAGAAAGGAAAAGGTTCCTGCAGGGAAGACTGCTCAGACACATGCGGGAATTTGGCTGCTGTGTGTGGCTGTGAGAGTTCAAATGAGAGAGAAGACATCGCATGTTGCAGAAACGAGGACTCTTCAAAAGAATGCAAGGAATCTCCAATTATGCATGTTTGTGATGGTTTAAATAAGAGAGAAGTTGGTGGATGTTGCAAGAGCTACATGAAGGAATGCTGTGCCAAACTTGGTCACTCATCAAGACCTAGATTTGTAGGAGGTTTGTCAGAAATTATTACAGAATAG
Predicted protein sequences of Glyma13g00630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g00630.2 sequence type=predicted peptide gene model=Glyma13g00630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDKAEKAVQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNQARLEANIRVYGDEKHQKRWPSPYSIASGVLLLLSLLKFVFHPLKYLALGAVAVGAYPIILKAIVSIRNLRLDINILMLIAVIGTIVMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNITPQKAVIAETGEVVDADEVKIDTVLAVKAGEVIPIDGVVLDGTCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKTSIQRLIDKFAKFYTPGVVIISALVAVIPLALKQHNEKHWLHFALVVLVSACPCALILSTPVATFCAYSKAATSGLLIKGGDHLETLAKIKVMAFDKTGTITKGEFVVTHFQSLSDDIDLNTLAYWVSSIESKSSHPLAAAIVDYGRSLSVEPEPEKVTEFENFPGEGICGKIEGRVIYIGNKKIATRAGSETVPILQGEIERGKTTGYIYLGATPLGFFSLSDTCRLGVQEAIGQLKSLGIKTAMLTGDSQSAAMQAQEQLGHSLELVHAELLPEDKVKIISEFKKEGPTAMIGDGLNDAPALAAADIGISMGISGSALASETGNIILMSNDIRKIPEAIKLARKARRKVLENIVLSIMTKAAILGLAIGGHPLVWAAVVADVGTCLLVIFNSMLLLRKGHNHGGKCCRSSTKPHNHKNGCGGSHGSSSHHHHHHEHDQQHQHEHHSHKHCCSDKTKKMSQPQKCGGAHGSSSHHHHHQHQHEQHNHDQHDQHEHHNHDQLDQREHHGHSQHDQHHQKCASQTCSSTCPPCSSNSSFGGIVNHCNTMKAHDQCKGSDEFHEHDHCHHGRCDKNHDEVHKHDTEDNHAVAEKRHGSCLGHKNHGTKHCHNQNLDKVTHDSASHSSPCHLNLPCKKESQQFTHNHCHLIHGCENLKDHESKDVLRSNHDIQHEKSGCHSDFEKHETGEISIDIITEYVELASSLEEKGKGSCREDCSDTCGNLAAVCGCESSNEREDIACCRNEDSSKECKESPIMHVCDGLNKREVGGCCKSYMKECCAKLGHSSRPRFVGGLSEIITE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
