Glyma13g00520 - SoyBase

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Report for Sequence Feature Glyma13g00520

Feature Type:	gene_model
Chromosome:	Gm13
Start:	268356
stop:	272229
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g00520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57180	AT	Annotation by Michelle Graham. TAIR10: chloroplast import apparatus 2 \| chr5:23168393-23170763 FORWARD LENGTH=435	SoyBase	E_val: 2.00E-74	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045036	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_G7JUA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein CONSTANS-like protein n=1 Tax=Medicago truncatula RepID=G7JUA6_MEDTR	SoyBase	E_val: 1.00E-119	ISS
UniRef100_I1LVL9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVL9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g00520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g00520

Paralog	Evidence	Comments
Glyma17g06660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g00520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g100700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g00520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g00520

Limit To All Plant Sequences

>Glyma13g00520.2   sequence type=transcript   gene model=Glyma13g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAACAAGGTAAAATAATTGAAGAGGTAAAAGACAGAGAAACTAAGAAAAACTAATAAGCTTAATACAAGTGGTCCCACATTAGGAACAGCAGAGAAACTGAGCATTGTCTCTTCCTTCGTTCTCATCTCCACTGCTCCAGCTCCTCCACTGCAAGTGTCAAGAGAGAGAGTGTGTGTGTGTGAGTGAATTTCGAAACCCCAACCTCTCTTTCTCTCTCTTCCACCAAGTGACACAGTCGGTGGGCTTATACATACATACATACAGGGACCCCAACGGGTCTTTCCCTTTTAGTTTTATCTGCTTCGCCTCGTGACTCCCTTTCTCTCTGTTACTGAATTTAACACTGCTCAGCTTTCATACACTTCAATCCCATTTTATTGGCCACCTTTCCCTTATTCACAGTACTACTACTTCCTTATTCAACAGACACCAATTCCAGTTTCTCTTTTCAGGTTTCGGAATCAATCAATGCCGTGTTTTTAGATACCTGCCTGCTTTAGCTACCCTACGAACAACCTTTTCACATAATTGGTAATAGTCATAAAATAGCAAGTCCCAGATTTTTATTTTACACGATTCTCCTCTGGAGCGTTCTATTTCTTGCTTCTACTCTCTGTCTATTATATTCCCAACCCTCTTGGCCTTTTCTTCATTTCCCCATTTTTTATTTATAAAAAAGGCAATAACTTTTGTTGCTTGTACTTTCTGGGTTTAGGGTTTTGCACCCCCTTTAACAAAAACACAGAAGTGACAAGCCTATGTTCAAGTTCAACTCCATGCCTCTCCAATTCTGAACAATCTAAATTCCCGATTATATACAATGTCTTCTTCGTGTTTGAGTGGAGCCGGGGGAAGAACCTATGGATTCGATTTCGAATTCGTTAAATCTCCATCTTCATCTACTTTCACATCGCACACATCTTCTTCACCTTCCTCAACAATCTCCGAATCGAGCAATTCGCCGCTAGCAATCTCAACTAAGAAACCCAGAACACCGCGGAAGCGACCCAACCAAACCTACAACGAAGCCGCGGCGCTTCTCTCCACCGCGTACCCGAATTTGTTCTCCACGAAGAACCTCAAGACGCAGGGCAAAGGCAAATTCTCGAGGCCCACATCGGAGAATTTCGATTACGAGTCTTCGGAGCCGTTATTGCCGTTCAGAGTCTTCGACGGAACGGCGTCGTGTTTTCTTTTGGACCAAACGGGCCCGAAGCCCATCATGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGAGAATAATAATAACAAGGCGTGTGAGAGCCCCGGCGAGATAAGCTCCATCGTGAATTTCAATTCAGTTGAATTGAACGATGACGGCGAAGAGAGCCTCGACGCGGAATCGATTCTCGATGAGGAAATCGAAGAAGGGATCGATAGCATCATGGGGAGCAGTATCCAAGAGGTCTCAAACGACGCCGTTAGTAACTTGCCCTGGATTATGCCTTTTGACGGGAAATTGGAGTTCCCGAGACCCCGTGTTAGGGCTCTCCGCCACGTCGAAGACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCTTTCAATATCGCCCAAAATTAACACCAAGCCTCCGCCCGTGGCCGCCGAGAAGAAGATGAAGAAGAAGAAGAAGGTGGCCACGCCGGCGGAGAAAACGGTCGTCGTGGAGTTGAAGAACGCGGAATTGCCCAAACCGAAACAGGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGAACGCTTGGTCTGACCGCGGAACACCGTTCTCCGACGACAGTCCCCTAGCCGACGTGCCGGGAAATGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTTGTGGGACAATGGAGGAGTGAGAGAAGCTAGCGTGCTGCGCTACAAGGAGAAGCGGCGAACGCGCCTCTTCTCGAAGAAGATCAGGTACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGTACGAGTCAGTTCACAGTTGAGTTGAGGACACTTGAAGAAACTTGATTTATGTCAGATTAAAAAAAAAAAGAAAAAGAAAAAGGGAAATCTGCTTTTTGATTTGGTGATGATAATTGGATAATGAGGTGGGTGCGTGCGTCACAGTTTTTTTTTTTTTTTTGTTATGGATAGTGGACCACGTTTATGGTGGTTGGTCACTTTGTCCAACTTTTGAGGATCTATCTATTTTTTCACCTAGTTTGATACCCTGCCACTGCCAAT

Coding sequences of Glyma13g00520

Limit To All Plant Sequences

>Glyma13g00520.1   sequence type=CDS   gene model=Glyma13g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTTCGTGTTTGAGTGGAGCCGGGGGAAGAACCTATGGATTCGATTTCGAATTCGTTAAATCTCCATCTTCATCTACTTTCACATCGCACACATCTTCTTCACCTTCCTCAACAATCTCCGAATCGAGCAATTCGCCGCTAGCAATCTCAACTAAGAAACCCAGAACACCGCGGAAGCGACCCAACCAAACCTACAACGAAGCCGCGGCGCTTCTCTCCACCGCGTACCCGAATTTGTTCTCCACGAAGAACCTCAAGACGCAGGGCAAAGGCAAATTCTCGAGGCCCACATCGGAGAATTTCGATTACGAGTCTTCGGAGCCGTTATTGCCGTTCAGAGTCTTCGACGGAACGGCGTCGTGTTTTCTTTTGGACCAAACGGGCCCGAAGCCCATCATGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGAGAATAATAATAACAAGGCGTGTGAGAGCCCCGGCGAGATAAGCTCCATCGTGAATTTCAATTCAGTTGAATTGAACGATGACGGCGAAGAGAGCCTCGACGCGGAATCGATTCTCGATGAGGAAATCGAAGAAGGGATCGATAGCATCATGGGGAGCAGTATCCAAGAGGTCTCAAACGACGCCGTTAGTAACTTGCCCTGGATTATGCCTTTTGACGGGAAATTGGAGTTCCCGAGACCCCGTGTTAGGGCTCTCCGCCACGTCGAAGACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCTTTCAATATCGCCCAAAATTAACACCAAGCCTCCGCCCGTGGCCGCCGAGAAGAAGATGAAGAAGAAGAAGAAGGTGGCCACGCCGGCGGAGAAAACGGTCGTCGTGGAGTTGAAGAACGCGGAATTGCCCAAACCGAAACAGGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGAACGCTTGGTCTGACCGCGGAACACCGTTCTCCGACGACAGTCCCCTAGCCGACGTGCCGGGAAATGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTTGTGGGACAATGGAGGAGTGAGAGAAGCTAGCGTGCTGCGCTACAAGGAGAAGCGGCGAACGCGCCTCTTCTCGAAGAAGATCAGGTACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGGACGATTTGTTAGGAGGCTCAATTCTAGCGCAAATGCACACTGA

>Glyma13g00520.2   sequence type=CDS   gene model=Glyma13g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTTCGTGTTTGAGTGGAGCCGGGGGAAGAACCTATGGATTCGATTTCGAATTCGTTAAATCTCCATCTTCATCTACTTTCACATCGCACACATCTTCTTCACCTTCCTCAACAATCTCCGAATCGAGCAATTCGCCGCTAGCAATCTCAACTAAGAAACCCAGAACACCGCGGAAGCGACCCAACCAAACCTACAACGAAGCCGCGGCGCTTCTCTCCACCGCGTACCCGAATTTGTTCTCCACGAAGAACCTCAAGACGCAGGGCAAAGGCAAATTCTCGAGGCCCACATCGGAGAATTTCGATTACGAGTCTTCGGAGCCGTTATTGCCGTTCAGAGTCTTCGACGGAACGGCGTCGTGTTTTCTTTTGGACCAAACGGGCCCGAAGCCCATCATGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGAGAATAATAATAACAAGGCGTGTGAGAGCCCCGGCGAGATAAGCTCCATCGTGAATTTCAATTCAGTTGAATTGAACGATGACGGCGAAGAGAGCCTCGACGCGGAATCGATTCTCGATGAGGAAATCGAAGAAGGGATCGATAGCATCATGGGGAGCAGTATCCAAGAGGTCTCAAACGACGCCGTTAGTAACTTGCCCTGGATTATGCCTTTTGACGGGAAATTGGAGTTCCCGAGACCCCGTGTTAGGGCTCTCCGCCACGTCGAAGACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCTTTCAATATCGCCCAAAATTAACACCAAGCCTCCGCCCGTGGCCGCCGAGAAGAAGATGAAGAAGAAGAAGAAGGTGGCCACGCCGGCGGAGAAAACGGTCGTCGTGGAGTTGAAGAACGCGGAATTGCCCAAACCGAAACAGGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGAACGCTTGGTCTGACCGCGGAACACCGTTCTCCGACGACAGTCCCCTAGCCGACGTGCCGGGAAATGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTTGTGGGACAATGGAGGAGTGAGAGAAGCTAGCGTGCTGCGCTACAAGGAGAAGCGGCGAACGCGCCTCTTCTCGAAGAAGATCAGGTACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGTACGAGTCAGTTCACAGTTGAGTTGA

Predicted protein sequences of Glyma13g00520

Limit To All Plant Sequences

>Glyma13g00520.1   sequence type=predicted peptide   gene model=Glyma13g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSCLSGAGGRTYGFDFEFVKSPSSSTFTSHTSSSPSSTISESSNSPLAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKGKFSRPTSENFDYESSEPLLPFRVFDGTASCFLLDQTGPKPIMERPKVVSVQEKENNNNKACESPGEISSIVNFNSVELNDDGEESLDAESILDEEIEEGIDSIMGSSIQEVSNDAVSNLPWIMPFDGKLEFPRPRVRALRHVEDGNWWNFPAVDILSISPKINTKPPPVAAEKKMKKKKKVATPAEKTVVVELKNAELPKPKQGLMLKLNYDDVRNAWSDRGTPFSDDSPLADVPGNDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNSSANAH*

>Glyma13g00520.2   sequence type=predicted peptide   gene model=Glyma13g00520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSCLSGAGGRTYGFDFEFVKSPSSSTFTSHTSSSPSSTISESSNSPLAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKGKFSRPTSENFDYESSEPLLPFRVFDGTASCFLLDQTGPKPIMERPKVVSVQEKENNNNKACESPGEISSIVNFNSVELNDDGEESLDAESILDEEIEEGIDSIMGSSIQEVSNDAVSNLPWIMPFDGKLEFPRPRVRALRHVEDGNWWNFPAVDILSISPKINTKPPPVAAEKKMKKKKKVATPAEKTVVVELKNAELPKPKQGLMLKLNYDDVRNAWSDRGTPFSDDSPLADVPGNDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKVRVSSQLS*

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