Glyma13g00490 - SoyBase

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Report for Sequence Feature Glyma13g00490

Feature Type:	gene_model
Chromosome:	Gm13
Start:	244608
stop:	249402
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g00490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19270	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mitotic checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has 930 Blast hits to 533 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 327; Fungi - 143; Plants - 61; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink). \| chr2:8360349-8361907 REVERSE LENGTH=359	SoyBase	E_val: 3.00E-65	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3903	KOG	Mitotic checkpoint protein PRCC	JGI		ISS
PTHR13621	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13621:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF10253	PFAM	Mitotic checkpoint protein PRCC Cterm	JGI		ISS
UniRef100_C0Z3D7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT2G19270 protein n=1 Tax=Arabidopsis thaliana RepID=C0Z3D7_ARATH	SoyBase	E_val: 1.00E-60	ISS
UniRef100_I1LVL6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVL6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g00490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g00490

Paralog	Evidence	Comments
Glyma17g06620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g00490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g101000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g00490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g00490

Limit To All Plant Sequences

>Glyma13g00490.1   sequence type=CDS   gene model=Glyma13g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTCTACTGGCGAACTATGCCTCTTCAGATGAAGAAGAAGATCAACAGCCATCCCCACCAAAAACGACGACGTTTTCCTCCCTTCCTCAACCCAAACTTTCTCTGTTTCAATCCCTTCCTCAACCCAAATCTTCTCTGTTTCAATCCCTTCCTCCACCCAAACAACCTTCCACCGAAAGCTCTTCCCTCCCTAACCCTAACCCTAACCCTGACCCTAAACCCCAAATCGAAAAGACACAACCCAAACGCGTCGTGCAATTCAGGCCCCCAATCATCCCTCTCCCACACCCTTCACAACACGACGATGACGACGATGACGACGACGACGACGAAGAAGAAGAACGAAACAGAAGAAAGAAAAAGTTAGAGTCCTCCACGCAAACCTCATCGGTCAAGTCCTTCCTCGCCAGCATTCCAGCACCCAGGAACACCGCCACTCTCGGCGTTCAAGCAAGTTCCGGTTCAGGCCGGAAATCCATCCTCGAAACCGAAACACCGCCACCGGCATCGAATTCCGGTGGTTTCAGCAATGTTCCCGTCGATCAAAGTACAGGGGATTATGAAAATTTTGATGATTACCAATATGCCACTGACCAGTATGCTAGTTATTATGGCAATTTTGGTTCGGGTGCCGAGCCAGGGAGTTCGGGTACTGAACCAAAGGCTGGGGTTGCTGCTTATGGAACTGAACAGTATGGGAATTATGGTGATGCCTATGCTTCCTATGGGGATTATGGACAGTATGGGAATAATTGGGGTGACGTGTCGGCGCCACCGGTGCTGGAAGCTTCTGGGATTGATGTCAGTGTGGTAAGGATTCCTGGGAAGAGAGGGAGGCATGAGATTCCGACGGAAGTGATTGAGGTGAAGCAAGAAGAGTTGATTAAGAATCGGCCAAGAGAGGATCAGGTCAAGCTAACTGGGATTGCATTCGGACCCACTTATCAGCCTGCTTCGACAAAGGGGAAGCCTACAAAGCTGCACAAGAGGAAACATCAAATTGGTTCATTGTACTTTGATATGAAACAAAATGAAATGAAACTTGCTGAGCGGCGTGTAAAGGGCATGCTTACCAAAGCTGAAACACAAGCGAAATATGGATGGTGA

Predicted protein sequences of Glyma13g00490

Limit To All Plant Sequences

>Glyma13g00490.1   sequence type=predicted peptide   gene model=Glyma13g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSLLANYASSDEEEDQQPSPPKTTTFSSLPQPKLSLFQSLPQPKSSLFQSLPPPKQPSTESSSLPNPNPNPDPKPQIEKTQPKRVVQFRPPIIPLPHPSQHDDDDDDDDDDEEEERNRRKKKLESSTQTSSVKSFLASIPAPRNTATLGVQASSGSGRKSILETETPPPASNSGGFSNVPVDQSTGDYENFDDYQYATDQYASYYGNFGSGAEPGSSGTEPKAGVAAYGTEQYGNYGDAYASYGDYGQYGNNWGDVSAPPVLEASGIDVSVVRIPGKRGRHEIPTEVIEVKQEELIKNRPREDQVKLTGIAFGPTYQPASTKGKPTKLHKRKHQIGSLYFDMKQNEMKLAERRVKGMLTKAETQAKYGW*

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