Report for Sequence Feature Glyma13g00480
Feature Type: gene_model
Chromosome: Gm13
Start: 234715
stop: 237019
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g00480
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G57150 AT
Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:23152361-23153293 FORWARD LENGTH=226
SoyBase E_val: 1.00E-69 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009694 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR11514 Panther
MYC
JGI ISS
PTHR11514:SF7 Panther
B-MYC PROTO-ONCOGENE
JGI ISS
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI ISS
UniRef100_G7IG90 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH n=1 Tax=Medicago truncatula RepID=G7IG90_MEDTR
SoyBase E_val: 2.00E-100 ISS
UniRef100_UPI000233B954 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B954 related cluster n=1 Tax=unknown RepID=UPI000233B954
SoyBase E_val: 2.00E-160 ISS
Expression Patterns of Glyma13g00480
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g00480
Paralog Evidence Comments
Glyma17g06610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g00480 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g101100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g00480
Coding sequences of Glyma13g00480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g00480.2 sequence type=CDS gene model=Glyma13g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGAATATTGGTGAGGATCAGTACGGCTACTTGCCGGAGACCGACCTGTTTTTCCCAAACGAAGACCTTGGCAGCTGGGCAATAATGGATGGGGAAGCGGTCTCTTGGTACTATGATTCAAGCTCCCCGGACGGCACCGGTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTGGCACTTAGAGCAGTGGTCCCCAACATTACCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATAGAGTACATCCAGCACTTGCATGAACAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTAGAATCTAGGAATAAGTTCAAAAATCCAACCTATGAATTTGACCAGGACCTCCCTATTCTGCTCAGGTCTAAGAAGAAGAAAACAGAACACCTATTTGATTCTCTCAGTTCAAGAAATTCCCCATCAATTGAAATAATTGAGCTGAGGGTAACATACATGAGAGAGAAGACGTTTGTGGTGAACTTGACATGTAGTAAAAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTCAAAGTCATTGCGGCCAATATCACATCTTTTTCAGGCACGCTTTTGAAGAAGACAGCCTTCATCGAGGTTAGTCTCCCTCCCATTTTGCCCTTCTTAAATTAA
Predicted protein sequences of Glyma13g00480
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g00480.2 sequence type=predicted peptide gene model=Glyma13g00480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MENIGEDQYGYLPETDLFFPNEDLGSWAIMDGEAVSWYYDSSSPDGTGASSSVASKNIVSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQHLHEQEKRIQAEILDLESRNKFKNPTYEFDQDLPILLRSKKKKTEHLFDSLSSRNSPSIEIIELRVTYMREKTFVVNLTCSKRTDTMVKLCEVFESLKLKVIAANITSFSGTLLKKTAFIEVSLPPILPFLN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
