Report for Sequence Feature Glyma13g00390
Feature Type: gene_model
Chromosome: Gm13
Start: 133473
stop: 136988
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g00390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G57090 AT
Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein | chr5:23100765-23104456 FORWARD LENGTH=647
SoyBase E_val: 0 ISS
GO:0008361 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell size
SoyBase N/A ISS
GO:0009637 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to blue light
SoyBase N/A ISS
GO:0009640 GO-bp
Annotation by Michelle Graham. GO Biological Process: photomorphogenesis
SoyBase N/A ISS
GO:0009723 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009749 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus
SoyBase N/A ISS
GO:0009926 GO-bp
Annotation by Michelle Graham. GO Biological Process: auxin polar transport
SoyBase N/A ISS
GO:0009958 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive gravitropism
SoyBase N/A ISS
GO:0043481 GO-bp
Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light
SoyBase N/A ISS
GO:0046685 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance
SoyBase N/A ISS
GO:0048364 GO-bp
Annotation by Michelle Graham. GO Biological Process: root development
SoyBase N/A ISS
GO:0048443 GO-bp
Annotation by Michelle Graham. GO Biological Process: stamen development
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0000323 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: lytic vacuole
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009925 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: basal plasma membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0009672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: auxin:hydrogen symporter activity
SoyBase N/A ISS
GO:0010329 GO-mf
Annotation by Michelle Graham. GO Molecular Function: auxin efflux transmembrane transporter activity
SoyBase N/A ISS
PF03547 PFAM
Membrane transport protein
JGI ISS
UniRef100_C6ZJZ6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux carrier protein 3 n=1 Tax=Glycine max RepID=C6ZJZ6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1LVK8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVK8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g00390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g00390
Paralog Evidence Comments
Glyma17g06460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g00390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g101900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g00390
Coding sequences of Glyma13g00390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g00390.1 sequence type=CDS gene model=Glyma13g00390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCACCGGTAAGGATATTTATGATGTTTTCGCGGCTATTGTGCCCCTCTACGTGGCTATGATATTAGCATATGGCTCAGTTCGGTGGTGGAAAATTTTCACACCTGATCAATGTTCTGGCATAAACCGCTTTGTTGCCGTGTTCGCAGTTCCACTTCTTTCCTTCCACTTCATCTCCTCCAATGACCCTTATGCTATGAACTACCACTTCATAGCAGCTGATTCTCTTCAAAAAGTTGTCATTTTGGGTGCTCTTTTTCTATGGAACACCTTCACAAAACATGGTAGCCTAGACTGGACCATCACCCTCTTCTCACTTTCAACTCTTCCAAACACACTTGTTATGGGAATCCCTCTATTGAAGGCCATGTATGGGGACTTTTCAGGGAGCCTCATGGTCCAAATTGTGGTGTTGCAAAGTGTCATATGGTACACCTTCATGCTGTTCATGTTTGAATATAGAGGTGCAAAACTCCTCATCACAGAACAGTTCCCTGAGACTGCAGGCTCCATTACCTCCTTCAGGGTTGACTCAGATGTTGTCTCACTCAATGGTAGAGAGCCACTGCAAACAGATGCTGAGATAGGAGAAGATGGAAAACTTCACGTGGTGGTTAAAAGATCAGCAGCTTCTTCTATGATATCTTCCTTCAACAAGTCCCATTTAACTTCCATGACACCAAGAGCATCTAACCTCACTGGGGTTGAGATCTATTCTGTTCAGTCATCAAGAGAACCAACCCCAAGAGCTTCAAGTTTTAATCAAACAGATTTCTATGCCATGTTTGCAAGCAAGGCACCCAGTCCAAAACATGGCTACACGAACAGCTTCCAGAGTAATGGTGGCATTGGTGATGTTTACTCGTTGCAGTCTTCAAAAGGGGCAACGCCAAGGACTTCGAATTTTGAAGAGGAGATGTTGAAGATGCACAAGAAGAGAGGAGGGAGGAGCATGAGTGGCGAGTTGTTTAATGGTGGGTTGGTTTCTTCTAATTACCCGCCTCCGAATCCAATGTTTTCAGGGTCTACAAGTGCCGGTGGCCCCAAGAAGAAAGATAGCAGTGGTGGCGGTGCTGCTGCTGCACCTAACACTAACAAGGAGTTACACATGTTTGTTTGGAGTTCAAGTGCATCACCAGTTTCTGAGGGGAATCTGAGACATGCAGTTAATAGAGCTGCCTCTACTGACTTTGGAACTGTCGATCCTTCTAAGGCTGTTCCACACGAAACTGTTGCCTCAAAAGCTGTTCATGAATTGATTGAGAACATGAGTCCTGGTCGTAGAGGGAACGGAGATCAGAGGGAGCTTGAAATGGATGAAGGAGCCAAATTTGCCATAAGTGGATCTCCATACACCACCTGCCAGAACCAGAAGAAGGTGGACATGGAAGATGGCAATAATGCAAACAAAAACCAACAGATGCCACCTGCAAGTGTCATGACAAGACTCATCCTCATCATGGTTTGGAGAAAACTCATAAGAAATCCTAATACTTACTCCAGTCTTTTGGGACTTACATGGTCTCTCATATCATTTAGGTGGCACATTGAAATGCCAACTATTGTAAAAGGTTCCATCTCAATACTGTCTGATGCTGGTCTGGGAATGGCCATGTTCAGTCTAGGTCTGTTCATGGCATTACAACCCAAGATCATTGCCTGTGGAAAATCTGTGGCAGCATTTTCTATGGCTGTTAGGTTCTTGACAGGTCCAGCTGTGATTGCTGCAACTTCAATAGGCATTGGACTCCGTGGAGTTCTTTTGCATGTTGCAATTGTCCAGGCTGCACTTCCCCAAGGTATCGTTCCCTTTGTGTTCGCCAAAGAATACAATCTCCATGCAGATATACTTAGTACTGCGGTTATATTTGGGATGCTAATTGCATTGCCCATAACCATACTCTACTACGTGCTGCTTGGAGTCTAA
Predicted protein sequences of Glyma13g00390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g00390.1 sequence type=predicted peptide gene model=Glyma13g00390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MITGKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYHFIAADSLQKVVILGALFLWNTFTKHGSLDWTITLFSLSTLPNTLVMGIPLLKAMYGDFSGSLMVQIVVLQSVIWYTFMLFMFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGEDGKLHVVVKRSAASSMISSFNKSHLTSMTPRASNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFASKAPSPKHGYTNSFQSNGGIGDVYSLQSSKGATPRTSNFEEEMLKMHKKRGGRSMSGELFNGGLVSSNYPPPNPMFSGSTSAGGPKKKDSSGGGAAAAPNTNKELHMFVWSSSASPVSEGNLRHAVNRAASTDFGTVDPSKAVPHETVASKAVHELIENMSPGRRGNGDQRELEMDEGAKFAISGSPYTTCQNQKKVDMEDGNNANKNQQMPPASVMTRLILIMVWRKLIRNPNTYSSLLGLTWSLISFRWHIEMPTIVKGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAAFSMAVRFLTGPAVIAATSIGIGLRGVLLHVAIVQAALPQGIVPFVFAKEYNLHADILSTAVIFGMLIALPITILYYVLLGV*