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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20600 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | chr5:6966345-6967943 REVERSE LENGTH=532 | SoyBase | E_val: 1.00E-156 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3911 | KOG | Nucleolar protein NOP52/RRP1 | JGI | ISS | |
| PTHR13026 | Panther | NNP-1 PROTEIN (NOVEL NUCLEAR PROTEIN 1) (NOP52) | JGI | ISS | |
| PF04231 | PFAM | Endonuclease I | JGI | ISS | |
| PF05997 | PFAM | Nucleolar protein,Nop52 | JGI | ISS | |
| UniRef100_G7JKJ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal RNA processing protein-like protein n=1 Tax=Medicago truncatula RepID=G7JKJ1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BDBA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BDBA related cluster n=1 Tax=unknown RepID=UPI000233BDBA | SoyBase | E_val: 0 | ISS |
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Glyma13g00261 not represented in the dataset |
Glyma13g00261 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g06340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g00261.1 sequence type=CDS gene model=Glyma13g00261 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTATTCATTCATTGCAAATATGAGGTTAGGCACATCTGAGCTGAACCCACCCGCATTCTTTTCATGCCGGCGGCATTTCCCCGGAATACCAACACTCCAACTTCACCCACCCGCAAGACCAACGTCGCCGCGCCGGTGCCGCGATTGGGTAACCTATGCAAGCCGTCAAAAACCGCCGATTCCAATTTCTAGTAACATCGACGAGAGGGCCTTATGTTTTGATATCTTGTGGAGATGGCTTTCTAGACTTATCTCCTTTTACTTGCTATCTCTCAATCTCGCTGCTGCAGCCTCTGATTACCCAGCTCCCTCTACTTATCCCTGTGAGGACATTAGCCATTACTATTCTTCTGTGAAGCATTTTAGATTCAGAGGTGAAGCACTCAAAAGACAATTGAATAGCATCGTTGCCCCACATCATTCCTTGTCCTACAGAGAGGTGTGGGATGCCCTCAAGGTTCTTGATGCTGCTGATATTGATAATCCAGAAGCTTCATCTGAAATAGTTGAAATATACTCCTTGAGAGTTGTCCCAAAACGGTTGGCAGGAAAACCGCAGGGATGGAATAGGGAACATCTATGGCCTCGTTCTTATGGGCTGACTAAAGGTCCATCTTTGACTGATTTACACAATATTCGCCCTGCTGATGTAAATGTCAATTCATCAAGGGGGAACAAGTACTATGGTGAATGCATTACTAGCTCAAGCAAATGTTTGAGGCCCGCTAACAAGGAAGCTGCTTTGGACACTGAAACAGACAAGGAGAGGTGGGCACCACCTATGCAGGTTAGAGGGGATGTAGCAAGGGCATTAATGTACATGGCAGTCTGTTATGGGTTCCAACAACCAAGGGGAATTCCAGGCCTTCGCCTCTCAGATGCCCCAAATGTTGAAAAGAGGGAGATGGGACTCCTTTCCACTTTATTAAAATGGAATGAAGTTGATCCACCTTCAAGGGATGAAAAACTGAGAAATGAAAGGATATGCAAATTTTATCAGCACAATCGGAATCCATTTGTCGACCATCCGGAGTATGCCAACCTTATATGGAAGCAACCTCAGCTGGCATGCTGCAAGAAAACCACTCGAGACAAATCCCTCCGCCTCCTCCTGAAATCATGGCTCCCGTCGCAGTCCCAGCCCCTCTCCGACGACGATGCCAAGAAGCTTTGGAAGGGCCTCTTCTACTGCATGTGGCACTCCGACAAGCCCCTCGTCCAATCCGACCTCGTCGATCGCCTCTCCTCTCTCCTATTATCCCTCCACCTCTCCGTCTCCCTACAGTACTTGTCCACCTTCCTCCTCACCATGCGCCGCGAGTGGTCCGGCATCGACGCGCTGCGCCTTGACAAGTTCTACCTTCTAATCCGCAGGTTCGTCTCCAAGCTCTTCTCCCTCATGAAAACCAATTCCTGGGATCTCCTCCTTGTGCAGCGCTTAATGAATGTTTTCGACGAGGGGACTCTCTCCGCTCAGGATAACAAGTCTCATGGGAACGGTGTTAATTACCACATTGCCACTGTTTTTCTCGAGGAGCTTCGCCCTTTTCTCCCGCTCAAGCAGCAGGTTCTCGAGGTGCTGCTTAAGCCGTTTGTTTCGGCTATGGGGAGGGTGCATGATAAGGTCTTGGTGGGGAAGATTAGGTCTGGGGTGTTTGATTTGTTGCTTAAGATGGGAAAGAGGTTGTTGGAGGTTAAGAAGAGTGGGGTCGAGGTTGAAGTTGATTCTCGTGACGAGGTTGTTCTAATTGGAACGGTTGCATTGGTGATGGGGTTTTCTGGGAGGCTTTATGAAGTGGGTTCTTCTGCTGAGTGCATTCAGGGGAATAGGAAGGTGCTGTTTGCGCTGCATTCCGAGTTTTTGAAGCTGGAGAAGGAGTCCGTGAATTCGGGGTTCGAGTTTGTGATTCCTGACTTTGTTGTTGATGAGGAGGAGGAGGAAGTGCCGGAATTGGTTCCGCTGGGGCCTGCTGAGGTTGCTGGTAATGGTGAGGTGTTGAAGAAGTGCAAGAAGGATAAGAAGGTTTCTGTTGAAGGTGGAAAAAGCAAGAAGAAGAAGAAGAAGAAGAAGGGTGATGCCGCTGCTCAGGATTCTAGTGACAAGGAAAATGTGGCTTGTGAGAATGGTGGGAATTCAAACGATGGGAGTGTGGTGCTGTTGAATGAAACTGTGATTGCTAACCTGCAAAGGCAATTTGAGAAGGTTGCTGAGGAGGCGGGTTTGGATGATGGAGTTGCGAGCGCGTGTGATTCACCTCAGGCTGCATCTGCTACAGGAGGAACTGTGTCTAAGAAGAGGAAGAGGACAAAGAGTTTGAAAGGGAAGGCGTCTCAGGATTCTGCTGATTTGGATGGTGAGGAGAGTGCAGTGGCCAAGAGTGGAGAGAAGAGTACAAAGAAGGTAAGATTTTCGATGATAAATAACTTGGTGTGGAAGCCACACAATCCTTTACCTCCTCAGAGTTTGAGGTTGCCTCCCTCTGCAACACCCAGAGGAAGTGCACTCAAAAAGGGTGTGCCTCCAGGTCCTATCAGGGAGATGCCTCTTCCTACCAAAAAGCCAAAACTGAAGAGGGCCAGGAAGGCAATTAAGGGTGTTGCTCCTGTCAAACGCCTGAAGAAATTAAAATCACGTGCTGCATGA
>Glyma13g00261.1 sequence type=predicted peptide gene model=Glyma13g00261 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAYSFIANMRLGTSELNPPAFFSCRRHFPGIPTLQLHPPARPTSPRRCRDWVTYASRQKPPIPISSNIDERALCFDILWRWLSRLISFYLLSLNLAAAASDYPAPSTYPCEDISHYYSSVKHFRFRGEALKRQLNSIVAPHHSLSYREVWDALKVLDAADIDNPEASSEIVEIYSLRVVPKRLAGKPQGWNREHLWPRSYGLTKGPSLTDLHNIRPADVNVNSSRGNKYYGECITSSSKCLRPANKEAALDTETDKERWAPPMQVRGDVARALMYMAVCYGFQQPRGIPGLRLSDAPNVEKREMGLLSTLLKWNEVDPPSRDEKLRNERICKFYQHNRNPFVDHPEYANLIWKQPQLACCKKTTRDKSLRLLLKSWLPSQSQPLSDDDAKKLWKGLFYCMWHSDKPLVQSDLVDRLSSLLLSLHLSVSLQYLSTFLLTMRREWSGIDALRLDKFYLLIRRFVSKLFSLMKTNSWDLLLVQRLMNVFDEGTLSAQDNKSHGNGVNYHIATVFLEELRPFLPLKQQVLEVLLKPFVSAMGRVHDKVLVGKIRSGVFDLLLKMGKRLLEVKKSGVEVEVDSRDEVVLIGTVALVMGFSGRLYEVGSSAECIQGNRKVLFALHSEFLKLEKESVNSGFEFVIPDFVVDEEEEEVPELVPLGPAEVAGNGEVLKKCKKDKKVSVEGGKSKKKKKKKKGDAAAQDSSDKENVACENGGNSNDGSVVLLNETVIANLQRQFEKVAEEAGLDDGVASACDSPQAASATGGTVSKKRKRTKSLKGKASQDSADLDGEESAVAKSGEKSTKKVRFSMINNLVWKPHNPLPPQSLRLPPSATPRGSALKKGVPPGPIREMPLPTKKPKLKRARKAIKGVAPVKRLKKLKSRAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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