Report for Sequence Feature Glyma13g00240
Feature Type: gene_model
Chromosome: Gm13
Start: 28319
stop: 28876
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g00240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
UniRef100_I1LVJ4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVJ4_SOYBN
SoyBase E_val: 3.00E-90 ISS
Expression Patterns of Glyma13g00240
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g00240
Paralog Evidence Comments
Glyma17g06321 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g00240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g103400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g00240
Coding sequences of Glyma13g00240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g00240.1 sequence type=CDS gene model=Glyma13g00240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTGCTGCCACAAAATCACTAAAACTTGGACTGCACTCTCTACTCGTTTCAACCATCATCGCAAATCTAGGGTTTCCGGTGGTCCAGTAGCCGGTGCCGGTGCCGGTGAATACTCTGCCGATTGCGACGGAATTAGTCGCGGTTTGCTGAAGCTTCGAGATGATGTGCAAATGTGCGGGTACAGAGATGCTGAGGTCATGTGGAACATGCTGAACGTAACTTTGCAACGTGACCAAATGGAAGCGCCCAGAAGCTCCAAAAACGCTAAATTTCGCAAGCAGAGATCTATTTCCAGGGTTTTGTTTTGGACTAGCCATAACAGCGTCATGAATATCAGTAAATTAAAAATGATGAACGTCAAGTTTTGCTGTGGAAATTAA
Predicted protein sequences of Glyma13g00240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g00240.1 sequence type=predicted peptide gene model=Glyma13g00240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDCCHKITKTWTALSTRFNHHRKSRVSGGPVAGAGAGEYSADCDGISRGLLKLRDDVQMCGYRDAEVMWNMLNVTLQRDQMEAPRSSKNAKFRKQRSISRVLFWTSHNSVMNISKLKMMNVKFCCGN*