SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48020 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:19462888-19464790 REVERSE LENGTH=355 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0143 | KOG | Iron/ascorbate family oxidoreductases | JGI | ISS | |
| PTHR10209 | Panther | FE(II)/ ASCORBATE OXIDASE SUPERFAMILY | JGI | ISS | |
| PTHR10209:SF25 | Panther | SRG1-RELATED | JGI | ISS | |
| UniRef100_I0Z490 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Clavaminate synthase-like protein n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=I0Z490_9CHLO | SoyBase | E_val: 1.00E-138 | ISS |
| UniRef100_I1LVF3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVF3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g36810 not represented in the dataset |
Glyma12g36810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g239400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g36810.1 sequence type=CDS gene model=Glyma12g36810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCTCCCCGTTATAGATCTTTCTCCCTCCCTCTCCGGCGAGTGGGACCCACTTCTCTGCGCCGAGGTCAGCCGCAGCCTCAGGGAAACCGGCGCGCTCCTCGTCAAGGACCCTCGCTGCACCGTCGAGGACAACGATCGCTTCATCGACATGATGGAGCGCTACTTCTCAAAACCCCGCGACTTCAAACACCGCCATGAGAGACCCCACTTGCATTACCAGGTTGGGGTTACACCAGAGAAAGTAGAAGTTCCAAGAAGCTTGGTTGATGAAGAAATGCAGGAGAAACTGAAAGCGATGCCAAAAGAAAACCAGCCAAACACTCCTGTTGGACCTGATCTCAAATGGAGATACTTTTGGAGGATCGGTCCTCGACCGTCAAATACTCGTTTTCAGGAACTTAATGCTGAGCCAGTAATACCTGAAGGTTTCCCTGAATGGAAAGAAACTATGGATTCCTGGGGATACAAAATGATAGCAGCAATTGAAGTGGTTGCTGAAATGGCAGCTATTGGGTTTGGTCTTCCAAAGGATGCATTCACTTCTCTTATGAAGCTGGGCCCGCATCTGTTAGCACCAACAGGGAGTGACCTTCAAAAATATGGTCAGGAGGGAACTATCTTTGCAGGATATCACTATGACCTTAACTTCCTAACAATTCATGGTAGAAGTAGATTTCCTGGTTTAAACATCTGGTTAAGAAATGGACAGAAAGTTGAAGTGAAGGTTCCAATAGGATGTCTTCTTATTCAGACAGGAAAGCAGATAGAGTGGTTAACTGGAGGGGACTGCATAGCTGGCATGCATGAGGTTGTTGCCACAAAGAGGACACTTGATGCAATAAGTTTAGCACAAGAGCAGAATCGTAGCTTATGGAGAGTCTCTTCAACGTTGTTTGCACACATAGCATCAGATGCAGTTCTGAAGCCATTGGGACATTTTGCAGAATCACCCCTTGCAAGCAAATATCCACCTATGTGTGCAGGAGAGTATGTTGAACAAGAGCTTTCAGTAATCAATCTCAAGGGAAAGAAGTGA
>Glyma12g36810.1 sequence type=predicted peptide gene model=Glyma12g36810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLPVIDLSPSLSGEWDPLLCAEVSRSLRETGALLVKDPRCTVEDNDRFIDMMERYFSKPRDFKHRHERPHLHYQVGVTPEKVEVPRSLVDEEMQEKLKAMPKENQPNTPVGPDLKWRYFWRIGPRPSNTRFQELNAEPVIPEGFPEWKETMDSWGYKMIAAIEVVAEMAAIGFGLPKDAFTSLMKLGPHLLAPTGSDLQKYGQEGTIFAGYHYDLNFLTIHGRSRFPGLNIWLRNGQKVEVKVPIGCLLIQTGKQIEWLTGGDCIAGMHEVVATKRTLDAISLAQEQNRSLWRVSSTLFAHIASDAVLKPLGHFAESPLASKYPPMCAGEYVEQELSVINLKGKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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