Glyma12g36750 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g36750

Feature Type:	gene_model
Chromosome:	Gm12
Start:	39804913
stop:	39809364
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g36750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42280	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr2:17611428-17613163 REVERSE LENGTH=359	SoyBase	E_val: 2.00E-50	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0046685	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR10985	Panther	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED	JGI		ISS
PTHR10985:SF42	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7IWI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein n=1 Tax=Medicago truncatula RepID=G7IWI2_MEDTR	SoyBase	E_val: 3.00E-130	ISS
UniRef100_UPI000233D17D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D17D related cluster n=1 Tax=unknown RepID=UPI000233D17D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g36750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g36750

Paralog	Evidence	Comments
Glyma13g27455	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g36750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g238700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g36750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g36750

Limit To All Plant Sequences

>Glyma12g36750.1   sequence type=CDS   gene model=Glyma12g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTATTGTGTATAGTCATGCTGTGAAGTACTCTCAAGGGGAAACAAGGATGAACCCAGAAATGGATTCAAACATTGGTCAACATTGTCACCAACAAAATTCTGGACTAATGAGATACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGCGAACAACAACAACATTAATAATAACACCACCACCAATGGTTGTGTTAATGGCAAAGCTTTCAGAAGTGTGCATAATCATCATCAGCAGCAACGTTATCCTCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCAAACAATTCTGAGCCTTTGCAAGTGAAGGAAGAAGCAGTGGCCTCTGTTTCACAGCCACCACAACAGCACAATGGTTACTCCTATGGGTCTTCACCTCAGATGATGTACCAAACTCAGCAAATTCAAGGCTTGCCTATGCCAAATGGTTCTTTAGGGAATGCTTTTGATGGCTCATTCAGTGCAGTGAATTCCCTTGCTTCACAGAATTCCACACAACCTAGACTGGGTGCTTCCACCAATTGCAACAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGGTTTTTCTCCAATTACTCAGTTGATAATGCAATGAGAGATGTGGCAAGTTTTAGGGGCTGTGATGTCTCAAATGGACAAGCTATTACATCCTCAAGTGGGTTGCATGGTGGTACTTTGAACTTATCATCTAGGCCATCCTCTTGCTCCACCCGAATGCCACAGATTGCTGAAAATGGAAATGAAGGTGTGGAAGGAAATTATGTTGAAAGTAGAAACCTGAGAAATGATAATATCAACAGCACTAAATGTTACATGCCTAGTTTCACCACTGACTTCTGGGATGGTTCTTCATTCAGTCCCAGAACAGCTAGTAACAATGGTGAAATCTCATTTTCCACTTCAAATGCTATGGATATTCAGGGTGAAGATTTTGGATATCAAAAAGTTGGTTTGACCCACCATTCGAGTCTGCCTGGCTCTTCTAGTAGGGTGGCTACAATGGAGAAGTTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGAGCCAAGAGAGGTTTTGCCACTCATCCGAGAAGCATTGCAGAGAGGGAAAGAAGAACTCGAATTAGCGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAAACAGACAAGCAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAGATGCTTAGAGATACTAGGGCAAAGTGCACTTGTACAAGCAATCAGAAGCACTGA

Predicted protein sequences of Glyma12g36750

Limit To All Plant Sequences

>Glyma12g36750.1   sequence type=predicted peptide   gene model=Glyma12g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIVYSHAVKYSQGETRMNPEMDSNIGQHCHQQNSGLMRYRSAPSSLLTSLANNNNINNNTTTNGCVNGKAFRSVHNHHQQQRYPPSTSSEMETMLAKLISSNNSEPLQVKEEAVASVSQPPQQHNGYSYGSSPQMMYQTQQIQGLPMPNGSLGNAFDGSFSAVNSLASQNSTQPRLGASTNCNNLIRQKSSPAGFFSNYSVDNAMRDVASFRGCDVSNGQAITSSSGLHGGTLNLSSRPSSCSTRMPQIAENGNEGVEGNYVESRNLRNDNINSTKCYMPSFTTDFWDGSSFSPRTASNNGEISFSTSNAMDIQGEDFGYQKVGLTHHSSLPGSSSRVATMEKFYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKTDKQTSTADMLDLAVEYIKDLQKQVKMLRDTRAKCTCTSNQKH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain