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Report for Sequence Feature Glyma12g36580

Feature Type:gene_model
Chromosome:Gm12
Start:39622266
stop:39623903
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g36580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G07985AT Annotation by Michelle Graham. TAIR10: Expressed protein | chr1:2475508-2475942 FORWARD LENGTH=144 SoyBaseE_val: 7.00E-15ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LVD3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVD3_SOYBN SoyBaseE_val: 6.00E-91ISS
UniRef100_Q9LN08UniRef Annotation by Michelle Graham. Most informative UniRef hit: T6D22.8 n=1 Tax=Arabidopsis thaliana RepID=Q9LN08_ARATH SoyBaseE_val: 4.00E-11ISS

Expression Patterns of Glyma12g36580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g36580 not represented in the dataset
Glyma12g36580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g36580
ParalogEvidenceComments
Glyma13g27260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g36580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g237100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g36580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g36580
>Glyma12g36580.1   sequence type=CDS   gene model=Glyma12g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGAGGAAAAAATTCTCTCTAGGATTGACCGTTTGGATAATGTGTTGCGGCATTTGGAGGAAATTAGAGGGTGCAATCCATCTCCGAAGAGCTCGTGTGCATCTACTCCAACAAGTGGAAGTGACGGACACGTGTCGTCCACTGATTTCTCCCCAAAGAGTTTAGAGAAGCACTGCCGTCCGATTGAAAACATTATGATGGAGACCGAAGCCAAAGGAACGATGATAGAGAGGCTCAATCAGGTGGAGGATCGAATGCTAAAGCTGGAAGAAGAGTTGGTAGCAAAGAAGAAAGAGGAAGGGAAGAAAATGAATAGCCCAAAGAAAGGTTTTAAACAGCTTGTGAAGCAAAGTATGAAACCTAGGGGAAAACATAGTAATAAAGAAGCATGA
Predicted protein sequences of Glyma12g36580
>Glyma12g36580.1   sequence type=predicted peptide   gene model=Glyma12g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATEEKILSRIDRLDNVLRHLEEIRGCNPSPKSSCASTPTSGSDGHVSSTDFSPKSLEKHCRPIENIMMETEAKGTMIERLNQVEDRMLKLEEELVAKKKEEGKKMNSPKKGFKQLVKQSMKPRGKHSNKEA*






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