SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15030 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink). | chr4:8578989-8581180 FORWARD LENGTH=278 | SoyBase | E_val: 3.00E-110 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1297 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR11567 | Panther | ACID PHOSPHATASE-RELATED | JGI | ISS | |
| PTHR11567:SF25 | Panther | FRA10AC1 PROTEIN | JGI | ISS | |
| PF09725 | PFAM | Folate-sensitive fragile site protein Fra10Ac1 | JGI | ISS | |
| UniRef100_I1LVD1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVD1_SOYBN | SoyBase | E_val: 1.00E-178 | ISS |
| UniRef100_O81652 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phyb1 n=1 Tax=Pimpinella brachycarpa RepID=O81652_PIMBR | SoyBase | E_val: 9.00E-122 | ISS |
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Glyma12g36550 not represented in the dataset |
Glyma12g36550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g27240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g236900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g36550.1 sequence type=CDS gene model=Glyma12g36550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTCGTTTGGGTCTCTGAAATCCACCATTTTCGAAAAAGAAGAGAGAAAACAGCAGTATCAGTCGCATATTCGAGGCCTCAATGCATACGACCGTCACAAAAAATTCATGGACGATTACGTTAAATTTTATGGAAAAGAAAGACCGTCAAACCTAAAGTTGCCTATTAAAACAGATCAAGATACACTAAGAGAAGGATACAGATTCATCCGGTCAGAGGAAGATGATATGAATCCATCTTGGGAACAAAGGCTGGTGAAGCGTTATTATGACAAGCTTTTTAAGGAATACTGCCTAGCTGACATGTCACAGTACAAGAGTGGTAAGATTGGTCTCAGGTGGAGGACAGAGAAGGAAGTCATATCTGGCAAGGGCCAGTTAATATGTGGTAACAAGCATTGCAATGAGAAAGATGGGTTAGCAAGCTATGAGGTGAACTTTTGTTACTTTGAAGCTGGAGAAAACAAACAAGCCCTAGTTAAATTGGTAACATGTGAGAGGTGTGCATTCAAACTCAACTACAAGAGGCAAAAAGAAAAGGAGCTGTTAGAAAAAAGACAAGAAGAACAGGATAGACGAAAGAGGAATCGTTCAAAGAGTGATGATGATCTAGATGACTTCCAAGAAAGCAAAGAGAGAAGGCGGAAAGGGAAAAAGGCTTTGACTTCAGCCAGTGATCATAAAATTGATGACGATGATGATAACTTAGATGAGTTTCTTGACGGGATGTTTCTGTGA
>Glyma12g36550.1 sequence type=predicted peptide gene model=Glyma12g36550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFGSLKSTIFEKEERKQQYQSHIRGLNAYDRHKKFMDDYVKFYGKERPSNLKLPIKTDQDTLREGYRFIRSEEDDMNPSWEQRLVKRYYDKLFKEYCLADMSQYKSGKIGLRWRTEKEVISGKGQLICGNKHCNEKDGLASYEVNFCYFEAGENKQALVKLVTCERCAFKLNYKRQKEKELLEKRQEEQDRRKRNRSKSDDDLDDFQESKERRRKGKKALTSASDHKIDDDDDNLDEFLDGMFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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