Glyma12g36440 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g36440

Feature Type:	gene_model
Chromosome:	Gm12
Start:	39502164
stop:	39505383
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g36440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39110	AT	Annotation by Michelle Graham. TAIR10: Malectin/receptor-like protein kinase family protein \| chr4:18222483-18225119 REVERSE LENGTH=878	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF550	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF11721	PFAM	Di-glucose binding within endoplasmic reticulum	JGI		ISS
UniRef100_G7LEI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinase-like protein n=1 Tax=Medicago truncatula RepID=G7LEI2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LVC2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LVC2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g36440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g36440

Paralog	Evidence	Comments
Glyma13g27130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g36440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g235900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g36440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g36440

Limit To All Plant Sequences

>Glyma12g36440.1   sequence type=CDS   gene model=Glyma12g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGATAGAAAAAAACAAAAACACCTTATTGACATCACCTTTTCTATCATCCTTCAAGTCATCATCTTCTTCCTCTTCTTCTTTGATGATGGCTACCCTCCTGGTCATTCTCTTGGCCTTGTTTTCTCCTTCACTAGGCCTTCCCTTAGCATCTTTCCAACCAAAAGACAATTTCCTCATTGATTGTGGTGCTGAAAACACAGTGACTCTCCCTGATGGAAGACAATTCAAATCAGACCCTCAAGCCAGATCCTTCTTGCAAGCCAATGATGAGTACAAAGTCTCAGCAAATGATGTGAATTTCCCTTCACCTATATACTCAAATGCAAGGATCTTCATTCAGGAAGCTAAGTACTCCTTCCATTTGGTTCAACCGGGTTTCCATTGGATTCGGCTTTATTTCTACCCCATCAAGAACAACATCTTTGATCTCCAGAAGGCAAGTTTTTCTGTCTACACAGATACCTATGTGCTACTCCACAGCTTCAATGTCAACAATACTGACAAGCCAATCTTCAAGGAGTACCTCATCAATGCAACCGAGCCTCAATTCACCATGTCCTTCATTCCCCTTAAGAACTCAGCTGCATTCATCAATGCCATTGAGGTTGTCTCAGCTCCTGATAACCTGATCTTCGACACCGGGGCCGGCCTTTTCCCCGTTGGCGAGTTCAGTGGCCTCACAACTTACGGCTTCCAGCCTGTTTACAGGGTCAACAATGGAGGGCCTCTCATCACCTCATCAAATGACACCCTTGGAAGGACTTGGGAAACTGATGAGCCTTACCTCACAAACAAGAACTTGGCCAAGAGTGCTTCGGTGGCCACCTCCGCGGTTAAGTTCCCACAAGACAATCCTTCAATTTCTCCCATGATTGCACCACAAACTGTGTATGCCTCTGCCACTGAGATGGGTGATGCTGGTGTGAATCAGCCAAATTTCAATGTGTCATGGAAATTTGATGTGGACACCTCTTTTAGCTACCTTGTTAGGCTTCACTTCTGTGACATTGTTAGCAAAGGGCTCAATGAACTCTACTTTAATGTTTATGTTAATGGGAAAGTGGCAATCAATAACTTGGATTTATCAGCCATCACTGGTGCCTTGTCAACCCCATATTACAAAGACATTGTGGTGAATGCAACATTGATGTCTGAGGGGCTAACAGTTCAGGTTGGTCCAGCAAATGCTGATGGTGGAAATGCCAATGCCATTGTGAATGGCATAGAGGTCTTGAAGATGAGCAGCTCTGTGAACAGTTTGGATGGAGAATTTGGTGTTGATGGAAGAAGTGTTAATGGTTCTAACCGCGGCACGGTGGCAGCCGTTGGATTTGCCATGATGTTTGGAGCCTTTGTGGGTCTTGGTGCTATGGTGATCAAGTGGCACAAGAGGCCTCAGGACTGGCAAAAGAGGAACAGCTTCTCCTCATGGTTGCTTCCTCTGCACGCTGGTGACACAAGCTTCATGAGCAAGAACTCAATGGGAAAGAGCAACTTCTTCTCCTCGTCGATGGGATTAGGCCGGTACTTCTCCTTCGCGGAACTTCAGGAAGCAACCAAGAACTTTGACTCCAAGAACATCATTGGTGTTGGTGGATTTGGCAATGTGTATTTGGGTGTGATTGATGAGGGGACTCAAGTGGCAGTCAAGAGAGGAAACCCTCAATCAGAACAAGGCATCACAGAGTTCCAAACTGAAATCCAAATGCTGTCTAAGCTCAGGCACAGGCACTTGGTGTCCTTGATTGGATACTGTGATGAGAATGATGAGATGATCCTGGTTTATGAGTACATGCCTAATGGCCACTTCAGAGACCATCTTTATGGAAAGAACTTACCTGCTCTCTCATGGAAGCAAAGACTAGATATCTGTATTGGATCAGCTCGCGGTCTTCACTACCTTCACACCGGCACAGCTCAAGGCATCATTCACCGCGATGTCAAGACCACCAACATCTTGCTTGATGAGAATTTCACAGCCAAGGTTTCTGATTTTGGTCTTTCAAAGGATGCACCAATGGGGCAGGGTCATGTTAGCACTGCTGTGAAGGGTAGCTTTGGTTATCTTGACCCTGAGTACTTCAGGAGGCAGCAACTGACTGAAAAGTCTGATGTGTACTCATTTGGGGTGGTTCTGCTTGAGGCACTCTGTGCAAGACCAGCCATCAACCCTCAGTTGCCCCGCGAACAAGTAAACTTGGCTGATTGGGCGATGCAATGGAAGAGGAAGGGCCTTCTTGACAAGATCATTGACCCTCTCCTAGTTGGTTGCATCAATCCTGAATCCATGAAGAAGTTTGCTGAGGCTGCTGAGAAGTGTTTGGCAGATCATGGTGTGGATAGGCCTTCAATGGGAGATGTTTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGGCCTTCACACAAGGAAAGGCTGAGGATGAGACTAAGTCATCATCAGCAGTCCCTACTGCAGCTGTTCCTACTTCACCTGCCCCACCAACACCTCCCATTTCTTCTGATGACCGCCCGGCTGCGCCTGCTCGTCCGGAAGTGAATAATAATACTTCATCGGATGTGCATTCTATTGATGACCATTCTGGAACTGCAATGTTTGCTCAGTTTAGCAATCTCAATGGCAGGTGA

Predicted protein sequences of Glyma12g36440

Limit To All Plant Sequences

>Glyma12g36440.1   sequence type=predicted peptide   gene model=Glyma12g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKIEKNKNTLLTSPFLSSFKSSSSSSSSLMMATLLVILLALFSPSLGLPLASFQPKDNFLIDCGAENTVTLPDGRQFKSDPQARSFLQANDEYKVSANDVNFPSPIYSNARIFIQEAKYSFHLVQPGFHWIRLYFYPIKNNIFDLQKASFSVYTDTYVLLHSFNVNNTDKPIFKEYLINATEPQFTMSFIPLKNSAAFINAIEVVSAPDNLIFDTGAGLFPVGEFSGLTTYGFQPVYRVNNGGPLITSSNDTLGRTWETDEPYLTNKNLAKSASVATSAVKFPQDNPSISPMIAPQTVYASATEMGDAGVNQPNFNVSWKFDVDTSFSYLVRLHFCDIVSKGLNELYFNVYVNGKVAINNLDLSAITGALSTPYYKDIVVNATLMSEGLTVQVGPANADGGNANAIVNGIEVLKMSSSVNSLDGEFGVDGRSVNGSNRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSKNSMGKSNFFSSSMGLGRYFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNLPALSWKQRLDICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPLLVGCINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKAEDETKSSSAVPTAAVPTSPAPPTPPISSDDRPAAPARPEVNNNTSSDVHSIDDHSGTAMFAQFSNLNGR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain