Glyma12g36300 - SoyBase

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Report for Sequence Feature Glyma12g36300

Feature Type:	gene_model
Chromosome:	Gm12
Start:	39418338
stop:	39419741
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g36300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14770	AT	Annotation by Michelle Graham. TAIR10: Nodulin MtN3 family protein \| chr3:4957787-4959202 REVERSE LENGTH=236	SoyBase	E_val: 5.00E-110	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
GO:0051119	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity	SoyBase	N/A	ISS
KOG1623	KOG	Multitransmembrane protein	JGI		ISS
PTHR10791	Panther	STROMAL CELL PROTEIN/NODULIN MTN3-RELATED	JGI		ISS
PF03083	PFAM	MtN3/saliva family	JGI		ISS
UniRef100_G8A244	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G8A244_MEDTR	SoyBase	E_val: 3.00E-142	ISS
UniRef100_I1LVA8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVA8_SOYBN	SoyBase	E_val: 3.00E-165	ISS

Proteins Associated with Glyma12g36300

Locus	Gene Symbol	Protein Name
	SWEET29	sucrose transporter gene 29
	SWEET29	sucrose effluxer gene 29

Expression Patterns of Glyma12g36300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g36300

Paralog	Evidence	Comments
Glyma13g33950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g36300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g234500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g36300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g36300

Limit To All Plant Sequences

>Glyma12g36300.1   sequence type=CDS   gene model=Glyma12g36300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTCTTTGCTGCATTTTCCATTTGTAAAGTTGCCAAGGATGCAGCTGGAGTTGCAGGAAATGTGTTTGCTTTTGGGTTGTTTGTGTCTCCCATACCCACATTTAGGAGGATTATCAGAAATGGGTCAACAGAGATGTTCTCAGGGTTGCCATATATTTATTCCCTTCTGAACTGCTTGATCTGCATGTGGTATGGCACACCTCTGATATCTGCTGATAATTTGTTGGTTACAACTGTTAATTCAATTGGAGCAGTCTTTCAGTTTGTGTACACAATCATCTTCCTGATGTATGCTGAGAAAGCAAAGAAGGTGAGAATGGTTGGATTATTGCTGGCAGTTCTTGGCATGTTTGCAATCGTATTGGTTGGGAGCTTGCAGATAGATGACGTTATAATGCGTCGGTTCTTTGTGGGGTTCTTGAGCTGCGCGTCTCTCATTTCAATGTTTGCCTCTCCATTGTTTATAATTAAATTGGTCATTCAGACAAAGAGTGTTGAATTCATGCCGTTTTATCTCTCACTTTCCACCTTCCTAATGAGCACCTCTTTCTTACTTTATGGATTATTCAACGATGATGCTTTTATTTATGTGCCAAATGGGATAGGAACTATTTTGGGAATGATACAGTTGATATTATACTTCTACTTCGAGAGTAAATCTAGAGAGAGCTCCAGAGAACCTCTGATAGTATCATATGCATGA

Predicted protein sequences of Glyma12g36300

Limit To All Plant Sequences

>Glyma12g36300.1   sequence type=predicted peptide   gene model=Glyma12g36300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLFAAFSICKVAKDAAGVAGNVFAFGLFVSPIPTFRRIIRNGSTEMFSGLPYIYSLLNCLICMWYGTPLISADNLLVTTVNSIGAVFQFVYTIIFLMYAEKAKKVRMVGLLLAVLGMFAIVLVGSLQIDDVIMRRFFVGFLSCASLISMFASPLFIIKLVIQTKSVEFMPFYLSLSTFLMSTSFLLYGLFNDDAFIYVPNGIGTILGMIQLILYFYFESKSRESSREPLIVSYA*

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