Glyma12g36290 - SoyBase

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Report for Sequence Feature Glyma12g36290

Feature Type:	gene_model
Chromosome:	Gm12
Start:	39402963
stop:	39406646
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g36290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78570	AT	Annotation by Michelle Graham. TAIR10: rhamnose biosynthesis 1 \| chr1:29550110-29552207 FORWARD LENGTH=669	SoyBase	E_val: 0	ISS
GO:0009225	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0010253	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-rhamnose biosynthetic process	SoyBase	N/A	ISS
GO:0010315	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin efflux	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0045226	GO-bp	Annotation by Michelle Graham. GO Biological Process: extracellular polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0051555	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonol biosynthetic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008831	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dTDP-4-dehydrorhamnose reductase activity	SoyBase	N/A	ISS
GO:0010280	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-L-rhamnose synthase activity	SoyBase	N/A	ISS
GO:0050377	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 4,6-dehydratase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG0747	KOG	Putative NAD+-dependent epimerases	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF2	Panther	HYDROXYSTEROID DEHYDROGENASE	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
PF04321	PFAM	RmlD substrate binding domain	JGI		ISS
UniRef100_D2D336	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhamnose synthase n=1 Tax=Gossypium hirsutum RepID=D2D336_GOSHI	SoyBase	E_val: 0	ISS
UniRef100_I1LVA7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LVA7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g36290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g36290 not represented in the dataset	Glyma12g36290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g36290

Paralog	Evidence	Comments
Glyma13g33960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g36290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g234300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g36290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g36290

Limit To All Plant Sequences

>Glyma12g36290.2   sequence type=transcript   gene model=Glyma12g36290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTCATGCATAAAAACCGCGTCTATATATATACAGAGAAAGTGTGTAGAGTCCAAATCTAAATCTGAGAACTACCATTTTCCATTTCTTCTGTGTCTGAAAAATTTCTCTTTCTTGTCTTCGTGTTTTCTCCTTCTTCTTCGCTTCATCGCTTGCCAATTCTTGCTTGACATGGCTACGCATACGCCCAAAAATATCCTCATTACTGGAGCTGCTGGATTCATCGCATCTCATGTTGCGAACCGTCTTATCCGGAATTATCCCCAGTACAAAATTGTTGTTCTTGACAAACTTGATTATTGCTCGAATCTGAAGAATCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCGTTTGGTAACAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGTTACTCCCAACAAATCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTGATGGCATATGGAAGGTCATATGGGTTACCTGTGATCACAACACGAGGAAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCCATGCAAGGCAAGCCTCTTCCAATCCACGGGGATGGTTCTAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTCGGGCATGTTTACAATATTGGTACTAAGAAGGAAAGGAGGGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACCCAGAGACTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATGAAAAGCTGAAAATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCCCATCCAAGGATGCTGATGATGCCCGGTGGACTGGAGAGACATTTTGATGGATCTGACGAAGAAAAACCTCCATCGTATGTCTCAACTAATACTCGAATGGTGGTTCCGACATCCAAGAATGTTAACTCCTCACAGAAACCTGCTCTCAAGTTCTTGCTCTATGGCAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAGTTGTGTGAAAAACAAGAAATTCCCTACGAATATGGAAAAGGACGACTAGAGGACCGATCATCACTTGTGGCTGATATTCAGAATGTGAAGCCAACACACATTTTTAATGCAGCAGGAGTAACTGGCAGACCCAATGTTGATTGGTGTGAATCTCACAAGACAGAAACCATTCGCACCAACGTTGCTGGGACTTTAACATTGGCTGATGTCAGCAGAGAGCATGGAATCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTATGACAAAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAACTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTCGAAGAGCTCTTGAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACTTGAGCAATCCGCGCAATTTCATCACCAAGATTTCTCGTTATAACAAAGTAGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCGATTTCAATTGAGATGGCAAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATTCTCGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGACTAACTTCAATCTTGAAGAGCAAGCCAAGGTGATAATTGCTCCACGGAGCAACAATGAGATGGATGCATCCAAACTGAAGAACGAGTTCCCTGAGCTTCTTTCCATCAAGGAATCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAAAAGTATTGAGCGGTTTCATGTTTTAGAAATCAAAGATTATGCATTTTTGTTGCGGGCTACATAGATCACTCTTTATTTCATTGTTATTTCGTTGGGTTTTGATAAGAACCTTACTAGAAAAGCTAGCCATGTAGTTCTTGTTCTCATAGCTACAAGTGATTCCAGTTTCAGCATAGTTCCATCATGTTACTGTGTTTAGAGGGTGACAAGTATAATAATTGGGCCAGATATGGTTCCTAAGTTAACATTTCTGTAGCTTTATTCTAGTTTGTAGCGTCCTCTGTTAAGAGCAGCCTTAGAAAATAGGGTCTTGTTACCTAAAAGCTTTTGCATCCTGGAAGGCATGTATTCTTTTTATTGCTCATATATTATATCCTTTTTGTGGGGTATTCAGTTATACTTTTATCGTATTTGCATTGTACAATATGCAGTGAAATGGATGGTGCTACTGAGATATTCATTTAACTTCCTCCTGTTTGAGTAAAAAATTAGTGTTGG

Coding sequences of Glyma12g36290

Limit To All Plant Sequences

>Glyma12g36290.1   sequence type=CDS   gene model=Glyma12g36290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACGCATACGCCCAAAAATATCCTCATTACTGGAGCTGCTGGATTCATCGCATCTCATGTTGCGAACCGTCTTATCCGGAATTATCCCCAGTACAAAATTGTTGTTCTTGACAAACTTGATTATTGCTCGAATCTGAAGAATCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCGTTTGGTAACAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGTTACTCCCAACAAATCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTGATGGCATATGGAAGGTCATATGGGTTACCTGTGATCACAACACGAGGAAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCCATGCAAGGCAAGCCTCTTCCAATCCACGGGGATGGTTCTAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTCGGGCATGTTTACAATATTGGTACTAAGAAGGAAAGGAGGGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACCCAGAGACTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATGAAAAGCTGAAAATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCCCATCCAAGGATGCTGATGATGCCCGGTGGACTGGAGAGACATTTTGATGGATCTGACGAAGAAAAACCTCCATCGTATGTCTCAACTAATACTCGAATGGTGGTTCCGACATCCAAGAATGTTAACTCCTCACAGAAACCTGCTCTCAAGTTCTTGCTCTATGGCAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAGTTGTGTGAAAAACAAGAAATTCCCTACGAATATGGAAAAGGACGACTAGAGGACCGATCATCACTTGTGGCTGATATTCAGAATGTGAAGCCAACACACATTTTTAATGCAGCAGGAGTAACTGGCAGACCCAATGTTGATTGGTGTGAATCTCACAAGACAGAAACCATTCGCACCAACGTTGCTGGGACTTTAACATTGGCTGATGTCAGCAGAGAGCATGGAATCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTATGACAAAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAACTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTCGAAGAGCTCTTGAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACTTGAGCAATCCGCGCAATTTCATCACCAAGATTTCTCGTTATAACAAAGTAGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCGATTTCAATTGAGATGGCAAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATTCTCGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGACTAACTTCAATCTTGAAGAGCAAGCCAAGGTGATAATTGCTCCACGGAGCAACAATGAGATGGATGCATCCAAACTGAAGAACGAGTTCCCTGAGCTTCTTTCCATCAAGGAATCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAA

>Glyma12g36290.2   sequence type=CDS   gene model=Glyma12g36290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACGCATACGCCCAAAAATATCCTCATTACTGGAGCTGCTGGATTCATCGCATCTCATGTTGCGAACCGTCTTATCCGGAATTATCCCCAGTACAAAATTGTTGTTCTTGACAAACTTGATTATTGCTCGAATCTGAAGAATCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCGTTTGGTAACAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGTTACTCCCAACAAATCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTGATGGCATATGGAAGGTCATATGGGTTACCTGTGATCACAACACGAGGAAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCCATGCAAGGCAAGCCTCTTCCAATCCACGGGGATGGTTCTAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTCGGGCATGTTTACAATATTGGTACTAAGAAGGAAAGGAGGGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACCCAGAGACTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATGAAAAGCTGAAAATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCCCATCCAAGGATGCTGATGATGCCCGGTGGACTGGAGAGACATTTTGATGGATCTGACGAAGAAAAACCTCCATCGTATGTCTCAACTAATACTCGAATGGTGGTTCCGACATCCAAGAATGTTAACTCCTCACAGAAACCTGCTCTCAAGTTCTTGCTCTATGGCAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAGTTGTGTGAAAAACAAGAAATTCCCTACGAATATGGAAAAGGACGACTAGAGGACCGATCATCACTTGTGGCTGATATTCAGAATGTGAAGCCAACACACATTTTTAATGCAGCAGGAGTAACTGGCAGACCCAATGTTGATTGGTGTGAATCTCACAAGACAGAAACCATTCGCACCAACGTTGCTGGGACTTTAACATTGGCTGATGTCAGCAGAGAGCATGGAATCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTATGACAAAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAACTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTCGAAGAGCTCTTGAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACTTGAGCAATCCGCGCAATTTCATCACCAAGATTTCTCGTTATAACAAAGTAGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCGATTTCAATTGAGATGGCAAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATTCTCGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGACTAACTTCAATCTTGAAGAGCAAGCCAAGGTGATAATTGCTCCACGGAGCAACAATGAGATGGATGCATCCAAACTGAAGAACGAGTTCCCTGAGCTTCTTTCCATCAAGGAATCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAA

Predicted protein sequences of Glyma12g36290

Limit To All Plant Sequences

>Glyma12g36290.1   sequence type=predicted peptide   gene model=Glyma12g36290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATHTPKNILITGAAGFIASHVANRLIRNYPQYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICRLFKMDPETSIKFVENRPFNDQRYFLDDEKLKILGWSERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSDEEKPPSYVSTNTRMVVPTSKNVNSSQKPALKFLLYGRTGWIGGLLGKLCEKQEIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSREHGILMINYATGCIFEYDKAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWTNFNLEEQAKVIIAPRSNNEMDASKLKNEFPELLSIKESLIKYVFEPNKKTA*

>Glyma12g36290.2   sequence type=predicted peptide   gene model=Glyma12g36290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATHTPKNILITGAAGFIASHVANRLIRNYPQYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICRLFKMDPETSIKFVENRPFNDQRYFLDDEKLKILGWSERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSDEEKPPSYVSTNTRMVVPTSKNVNSSQKPALKFLLYGRTGWIGGLLGKLCEKQEIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSREHGILMINYATGCIFEYDKAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWTNFNLEEQAKVIIAPRSNNEMDASKLKNEFPELLSIKESLIKYVFEPNKKTA*

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