SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| ATCG00540 | AT | Annotation by Michelle Graham. TAIR10: photosynthetic electron transfer A | chrC:61657-62619 FORWARD LENGTH=320 | SoyBase | E_val: 0 | ISS |
| GO:0006091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy | SoyBase | N/A | ISS |
| GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
| GO:0009767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009512 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytochrome b6f complex | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0031361 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to thylakoid membrane | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| GO:0045158 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | SoyBase | N/A | ISS |
| PF01333 | PFAM | Apocytochrome F, C-terminal | JGI | ISS | |
| UniRef100_I1LV92 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LV92_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P49161 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Apocytochrome f n=1 Tax=Glycine max RepID=CYF_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g36150 not represented in the dataset |
Glyma12g36150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g232900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g36150.1 sequence type=CDS gene model=Glyma12g36150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAACTAGAAATGCTTTTTCTTGTATAAAGGAAGGGATTACTCGATCGATTTCCATATCGATCATGATATATATAATAATTCGAGCACCCATTTCAAACGCATATCCAATTTTTGCACAGCAGGGTTATGAAAATCCCCGAGAAGCAACCGGTCGTATTGTCTGTGCCAATTGCCATTTAGCTAATAAGCCAGTGGATATTGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTGAAACAAGTTCTTGCTAATGATAAAAAGGGAGCTTTGAATGTGGGGGCTGTTCTTATTTTACCGGAAGGTTTTGAATTGGCACCCCCCGATCGTATTTCGCCTGAGATTAAAGAGAAGATAGGCAATCTGTCTTTTCAAAACTATCGTCCTACAAAAAAAAATATTCTTGTGGTAGGCCCTGTTCCTGGTCAAAAATATAAAGAAATCACCTTTCCTATTCTTTCCCCGGATACCACTACTAAGAGAGATGTTCATTTCTTAAAATATCCTATATACGTAGGTGGGAACAGGGGAAGGGGTCAGATTTATCTTGACGGGAGCAAGAGTAATAATAATGTGTATAATGCTACAGCAGCGGGTATGGTAAAAAAAATCATACGAAAAGAAAAAGGGGGATACGAAATAACTATAGTGGATGCATTGGATGGGCGTGAAGTGATTGATATTATACCTCCAGGACCAGAACTTCTTGTTTCAGAAGGTGAATCTATCAAACTTGATCAGCCATTAACAAGTAATCCAAATGTGGGTGGATTTGGTCAGGGGGATGCGGAAATAGTACTTCAAGATCCGTTACGTGTCCAAGGTCTCTTGTTCTTCTTCGCATCTATTATTTTAGCACAAATCTTTTTAGTTCTTAAGAAGAAACAATTTGAGAAGGTTCAATTGTCCGAAATGAATTTCTAG
>Glyma12g36150.1 sequence type=predicted peptide gene model=Glyma12g36150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTRNAFSCIKEGITRSISISIMIYIIIRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANDKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQNYRPTKKNILVVGPVPGQKYKEITFPILSPDTTTKRDVHFLKYPIYVGGNRGRGQIYLDGSKSNNNVYNATAAGMVKKIIRKEKGGYEITIVDALDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASIILAQIFLVLKKKQFEKVQLSEMNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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