Glyma12g36060 - SoyBase

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Report for Sequence Feature Glyma12g36060

Feature Type:	gene_model
Chromosome:	Gm12
Start:	39176453
stop:	39180753
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g36060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78700	AT	Annotation by Michelle Graham. TAIR10: BES1/BZR1 homolog 4 \| chr1:29599854-29601539 FORWARD LENGTH=325	SoyBase	E_val: 8.00E-128	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF05687	PFAM	Plant protein of unknown function (DUF822)	JGI		ISS
UniRef100_B9S8F2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BRASSINAZOLE-RESISTANT 2 protein, putative n=1 Tax=Ricinus communis RepID=B9S8F2_RICCO	SoyBase	E_val: 7.00E-126	ISS
UniRef100_I1LV85	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LV85_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g36060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g36060

Paralog	Evidence	Comments
Glyma13g34170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g36060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g231500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g36060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g36060

Limit To All Plant Sequences

>Glyma12g36060.1   sequence type=CDS   gene model=Glyma12g36060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTCGGGGACGAGGCTACCCACGTGGAAGGAGAGAGAGAACAACAAGAAGAGAGAGAGGAGAAGAAGAGCCATAGCGGCGAAGATCTTCGCGGGTCTGAGGATGTATGGGAACTTCAAACTCCCAAAACACTGCGACAACAATGAAGTCCTCAAAGCTCTCTGCAACAAAGCTGGTTGGACCGTTGAACCCGATGGAACCACTTACCGCAAGGGATGCAAGCCTTCAGAGGGCATGGAGATAGTTGGTGGATCATCAGCAGCAGCAAGCCCTTGCTCATCTTACCATCCAAGTCCATGTGCTTCCTACAATCCAAGCCCTGGCTCATCATCCCCTTACTACACCCAAATTCCCAATCCTGATGGCAACTCCCTCATTCCATGGCTCAAGAACCTCTCCACTGCTTCATCTTCAGCATCCTCTCCCAAGCTTCCCCACCTCTACCTCCACAGTGGCTCCATCAGTGCTCCTGTGACGCCTCCTCTGAGCTCTCCAACCGCCAGAACGCCACGAATCAATGCTGAGTGGGACGAGCAGTCTGCGCGGCCGGGGCCCGGATGGACCAGACAGCAGCACTACTCATTCCTGCCATCTTCTAGTCCTCCCAGCCCCGGCCGCCAGGTTGTTGACCCTGAATGGTTTGCTGGGATCAAGCTTCCTCATGTTAGTCCAACCTCACCAACATTCAGCTTGGTCTCCTCAAACCCTTTTGCCTTCAAGGAACATGCTTTGCCCTCCAGCGGTTCGCCAATGTGGACTCCGGCTCAGAGTGGAACATGCTCTCCTGCTGTTCCACCGGGTTCTTATCAGAATGCTGACATTCCTATGTCTGATGCCGTTTCGGATGAATTTGCATTTGGAAGCAACGTGTTGGGGCTTGTCAAGCCTTGGGAAGGAGAAAGGATCCATGAGGAATTTGGATCAGATGATCTTGAACTCACACTTGGTAACTCAAAGACCAGATGA

Predicted protein sequences of Glyma12g36060

Limit To All Plant Sequences

>Glyma12g36060.1   sequence type=predicted peptide   gene model=Glyma12g36060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSGTRLPTWKERENNKKRERRRRAIAAKIFAGLRMYGNFKLPKHCDNNEVLKALCNKAGWTVEPDGTTYRKGCKPSEGMEIVGGSSAAASPCSSYHPSPCASYNPSPGSSSPYYTQIPNPDGNSLIPWLKNLSTASSSASSPKLPHLYLHSGSISAPVTPPLSSPTARTPRINAEWDEQSARPGPGWTRQQHYSFLPSSSPPSPGRQVVDPEWFAGIKLPHVSPTSPTFSLVSSNPFAFKEHALPSSGSPMWTPAQSGTCSPAVPPGSYQNADIPMSDAVSDEFAFGSNVLGLVKPWEGERIHEEFGSDDLELTLGNSKTR*

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