Glyma12g35820 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g35820

Feature Type:	gene_model
Chromosome:	Gm12
Start:	38944019
stop:	38948285
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g35820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42590	AT	Annotation by Michelle Graham. TAIR10: general regulatory factor 9 \| chr2:17732118-17733775 REVERSE LENGTH=262	SoyBase	E_val: 2.00E-144	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048528	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0019904	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein domain specific binding	SoyBase	N/A	ISS
GO:0045309	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein phosphorylated amino acid binding	SoyBase	N/A	ISS
KOG0841	KOG	Multifunctional chaperone (14-3-3 family)	JGI		ISS
PTHR18860	Panther	14-3-3	JGI		ISS
PF00244	PFAM	14-3-3 protein	JGI		ISS
UniRef100_E9KNA3	UniRef	Annotation by Michelle Graham. Best UniRef hit: SGF14n n=1 Tax=Glycine max RepID=E9KNA3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E9KNA3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SGF14n n=1 Tax=Glycine max RepID=E9KNA3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g35820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g35820

Paralog	Evidence	Comments
Glyma13g34580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g35820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g229200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g35820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g35820

Limit To All Plant Sequences

>Glyma12g35820.2   sequence type=transcript   gene model=Glyma12g35820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGAATCTTACCAAAAAAAACAAAAAAAAGCCGCATCTACCTTTCACTTCACTTGTGGTTTTTCACTCTCTCTGTCTCTCACCACACCACACTGAGGAGGGAGATAGTGGAAGGAACACTCAAATGACTCAACCAGCCATGGCTACCTTCTCCAAGGAACGCGAGAACTTTGTCTATGTTGCCAAGTTAGCTGAACAAGCTGAACGCTATGATGAGTGTTGAGTGGAGTGGTGCGGTGTGCAGAAATGGTGGATGCCATGAAGAAGGTGGCGAAGCTGGACGTTGAATTGAGTGTGGAAGAGAGGAACCTGTTCTCTGTTGGGTACAAGAATGTGGTGGGGTCACGGAGAGCTTCATGGAGGATCTTGTCATCGATAGAGCAGAAAGAGGAGTCAAAAGGGAATGAGTTGCATGTTAAGCGTATCAGGGATTACAGGAACAAGGTGGAGTTGGAGCTGTCCAACATTTGCAGTGACATTATGATAGTTTTAGATGAGCATCTTATTCCATCCACTAATATTGCGGAGTCCACGGTGTTTTATTATAAGATGAAAGGAGACTATTACCGGTATTTGGCAGAATTCAAGGCTGGTAATGAAAAGAAAGAGGTGGCAGATCAGTCACTTAAAGCATATGAGACAGCTTCTACCACTGCTGAGAGTGAACTACAACCTACACATCCTATTCGTTTGGGTCTGGCTCTAAATTTCTCTGTGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCATCTTGCAAAGCAAGCCTTTGATGATGCTGTCTCAGACCTGGATACCCTGAATGAGGATTCTTACAAGGACAGTACCTTGATTATGCAGCTGTTGAGGGATAACCTTACTTTATGGACTTCTGATATCCCCGAAGAGGGTGAGGACCAAAAAATGGAAAGCACAACCAGGGGAGAAGATGAGTTAGGCCGCTAGCCCATCGTTTTGTCGTATATCTAAGATTTGATGCATTAATTTTTCTCACAAGTATATTTGCCCCATTGTGGTGAAACCTCTATTTGAATGGTGCACTGCACCTCGTCAACTTCGACTCATTGTTATTTTTGAGTGATGGCCTATTTGAATCATCTTCATTTTTATGTTATTGTTGAGTAGTTTTATTCATGTGTTTGTGACAAAAACAACATTGGCTTGCAATGCATAATTTCACTGTTTGTATCCTGTTATGGTTAAGATCAGTTTGTGGGTTAGCATTTCAAGAACTGATCATATATGAGCCAACTCTAATATTGCAATATTTAGACTTTTGTTAAGTCTCATTTTGTTAAGACAGTAAAATTAGGTTAATCCTCTA

Coding sequences of Glyma12g35820

Limit To All Plant Sequences

>Glyma12g35820.1   sequence type=CDS   gene model=Glyma12g35820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCAACCAGCCATGGCTACCTTCTCCAAGGAACGCGAGAACTTTGTCTATGTTGCCAAGTTAGCTGAACAAGCTGAACGCTATGATGAAATGGTGGATGCCATGAAGAAGGTGGCGAAGCTGGACGTTGAATTGAGTGTGGAAGAGAGGAACCTGTTCTCTGTTGGGTACAAGAATGTGGTGGGGTCACGGAGAGCTTCATGGAGGATCTTGTCATCGATAGAGCAGAAAGAGGAGTCAAAAGGGAATGAGTTGCATGTTAAGCGTATCAGGGATTACAGGAACAAGGTGGAGTTGGAGCTGTCCAACATTTGCAGTGACATTATGATAGTTTTAGATGAGCATCTTATTCCATCCACTAATATTGCGGAGTCCACGGTGTTTTATTATAAGATGAAAGGAGACTATTACCGGTATTTGGCAGAATTCAAGGCTGGTAATGAAAAGAAAGAGGTGGCAGATCAGTCACTTAAAGCATATGAGACAGCTTCTACCACTGCTGAGAGTGAACTACAACCTACACATCCTATTCGTTTGGGTCTGGCTCTAAATTTCTCTGTGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCATCTTGCAAAGCAAGCCTTTGATGATGCTGTCTCAGACCTGGATACCCTGAATGAGGATTCTTACAAGGACAGTACCTTGATTATGCAGCTGTTGAGGGATAACCTTACTTTATGGACTTCTGATATCCCCGAAGAGGGTGAGGACCAAAAAATGGAAAGCACAACCAGGGGAGAAGATGAGTTAGGCCGCTAG

>Glyma12g35820.2   sequence type=CDS   gene model=Glyma12g35820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGATGCCATGAAGAAGGTGGCGAAGCTGGACGTTGAATTGAGTGTGGAAGAGAGGAACCTGTTCTCTGTTGGGTACAAGAATGTGGTGGGGTCACGGAGAGCTTCATGGAGGATCTTGTCATCGATAGAGCAGAAAGAGGAGTCAAAAGGGAATGAGTTGCATGTTAAGCGTATCAGGGATTACAGGAACAAGGTGGAGTTGGAGCTGTCCAACATTTGCAGTGACATTATGATAGTTTTAGATGAGCATCTTATTCCATCCACTAATATTGCGGAGTCCACGGTGTTTTATTATAAGATGAAAGGAGACTATTACCGGTATTTGGCAGAATTCAAGGCTGGTAATGAAAAGAAAGAGGTGGCAGATCAGTCACTTAAAGCATATGAGACAGCTTCTACCACTGCTGAGAGTGAACTACAACCTACACATCCTATTCGTTTGGGTCTGGCTCTAAATTTCTCTGTGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCATCTTGCAAAGCAAGCCTTTGATGATGCTGTCTCAGACCTGGATACCCTGAATGAGGATTCTTACAAGGACAGTACCTTGATTATGCAGCTGTTGAGGGATAACCTTACTTTATGGACTTCTGATATCCCCGAAGAGGGTGAGGACCAAAAAATGGAAAGCACAACCAGGGGAGAAGATGAGTTAGGCCGCTAG

Predicted protein sequences of Glyma12g35820

Limit To All Plant Sequences

>Glyma12g35820.1   sequence type=predicted peptide   gene model=Glyma12g35820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQPAMATFSKERENFVYVAKLAEQAERYDEMVDAMKKVAKLDVELSVEERNLFSVGYKNVVGSRRASWRILSSIEQKEESKGNELHVKRIRDYRNKVELELSNICSDIMIVLDEHLIPSTNIAESTVFYYKMKGDYYRYLAEFKAGNEKKEVADQSLKAYETASTTAESELQPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDDAVSDLDTLNEDSYKDSTLIMQLLRDNLTLWTSDIPEEGEDQKMESTTRGEDELGR*

>Glyma12g35820.2   sequence type=predicted peptide   gene model=Glyma12g35820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDAMKKVAKLDVELSVEERNLFSVGYKNVVGSRRASWRILSSIEQKEESKGNELHVKRIRDYRNKVELELSNICSDIMIVLDEHLIPSTNIAESTVFYYKMKGDYYRYLAEFKAGNEKKEVADQSLKAYETASTTAESELQPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDDAVSDLDTLNEDSYKDSTLIMQLLRDNLTLWTSDIPEEGEDQKMESTTRGEDELGR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain