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Report for Sequence Feature Glyma12g35711

Feature Type:gene_model
Chromosome:Gm12
Start:38833825
stop:38837834
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g35711
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15050AT Annotation by Michelle Graham. TAIR10: IQ-domain 10 | chr3:5066879-5067892 REVERSE LENGTH=259 SoyBaseE_val: 3.00E-80ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PTHR10699Panther FAMILY NOT NAMED JGI ISS
PTHR10699:SF9Panther CALMODULIN BINDING JGI ISS
UniRef100_B9S963UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9S963_RICCO SoyBaseE_val: 3.00E-86ISS
UniRef100_UPI000233CE8DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CE8D related cluster n=1 Tax=unknown RepID=UPI000233CE8D SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g35711
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g35711 not represented in the dataset
Glyma12g35711 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g35711
ParalogEvidenceComments
Glyma13g34700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g35711 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g228200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g35711
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma12g35711
>Glyma12g35711.2   sequence type=transcript   gene model=Glyma12g35711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCCCTTCCCATTTCCATTCTTTATCACCGTACTTTCAGGTTCTTGCTTTGTTGGTGAAAATCTTGATGCTTGTTGGGTTTGGTTGTCTGTTGCCTTGACATTGTTTTCTGTAGGCTGTTTCCTATTCTTACCTCCTTGAGAAATAGAAATGGGTGCAAAGAAATGGTTTAAGATAATAGTCAAATTGAAGAAATCGAAGAAAGATAAATCCAAAGAAGAAAAGACCACTGATGAAAATTCAAATGAATACTCCAACGGGAAGCAGAGTACTCGTGAAGAGTCAAGTAGCAATGCCAATGAAGGTTTAATGATGGACCGGACTGTTCCTTCAAGGTTGATGGATGACATTGCAGCTACTCGGATTCAAAATGCATTTCGTTCATTTATGGCAAGAAGAACATTACACCATCTAAGGGGAGCAGAGAAATTCGAAGCTTTAATTCAAGATCACCTGGCCAGAGAGCAAACAGCAACTGCACTAAGCTATATACATTCATGGAGCAGAACACAAGAGCAAATTAGAGCTCGAAGAATCTGTATGATAACAGAAGCCAGGATTAAGCAGAAGAAATTGGAAACCCAGTTAAAAATTGAGGCCAAGATTCAGGAGCTCGAGGTGGAATGGTGCAATGGTTCTGAAACCATGGAAGAAATCATTTCCAGGTTACATCAGCGAGAGGAAGCAGCAATTAAGCGAGAGCGAGCCATGGCATATGCCTTCTCCCATCAGTGGAGGCCAAACTGTAGCCAGTATTTTGGTCAGGCTTCTTATAGCCTTGGTAAGGAAAGTTGGGGTTGGAGCTGGACCGAGCGTTGGGTTGCGGCACGTCCTTGGGAAGTTCGGGTTCGAGGTCAGACCACCAAAACAACAAAACTCAACGGCCATGGGCAGGTGCAAAAAACCAAATTAGACAAGATGAACCAAAATGAAAGCAAAGTAGCCTTGGCTAAACCTACACTATCAAACGGGAAGGAAAGGAAAACGGTACTTCAGGGCTGTCAAAGAACAATGTATCCAAATAGCCCATTCTAATTTGATGGTTTATGGTTTCTTCTTGCACTTCTTTGGGGGTTTATTTTCCATATTTTGCTTGGTGAGAATCTACCTTTTGGTGTGTACGTTCCACTAGGAGAGACTTCACTTATTGTCTGCTTTTGCATGGTGCATATGATTATGAATATGAATTCCCTAGTTTTGGTTGAGACATGAGAATGGTCTATTATTGTTATCCCTTTCATTTCAGGGGCAGTTATTTAAATCTTTACCGCAAGT
Coding sequences of Glyma12g35711
>Glyma12g35711.1   sequence type=CDS   gene model=Glyma12g35711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCAAAGAAATGGTTTAAGATAATAGTCAAATTGAAGAAATCGAAGAAAGATAAATCCAAAGAAGAAAAGACCACTGATGAAAATTCAAATGAATACTCCAACGGGAAGCAGAGTACTCGTGAAGAGTCAAGTAGCAATGCCAATGAAGGTTTAATGATGGACCGGACTGTTCCTTCAAGGTTGATGGATGACATTGCAGCTACTCGGATTCAAAATGCATTTCGTTCATTTATGGCAAGAAGAACATTACACCATCTAAGGGGAGCAGAGAAATTCGAAGCTTTAATTCAAGATCACCTGGCCAGAGAGCAAACAGCAACTGCACTAAGCTATATACATTCATGGAGCAGAACACAAGAGCAAATTAGAGCTCGAAGAATCTGTATGATAACAGAAGCCAGGATTAAGCAGAAGAAATTGGAAACCCAGTTAAAAATTGAGGCCAAGATTCAGGAGCTCGAGGTGGAATGGTGCAATGGTTCTGAAACCATGGAAGAAATCATTTCCAGGTTACATCAGCGAGAGGAAGCAGCAATTAAGCGAGAGCGAGCCATGGCATATGCCTTCTCCCATCAGTGGAGGCCAAACTGTAGCCAGTATTTTGGTCAGGCTTCTTATAGCCTTGGTAAGGAAAGTTGGGGTTGGAGCTGGACCGAGCGTTGGGTTGCGGCACGTCCTTGGGAAGTTCGGGTTCGAGGTCAGACCACCAAAACAACAAAACTCAACGGCCATGGGCAGGTGCAAAAAACCAAATTAGACAAGATGAACCAAAATGAAAGCAAAGTAGCCTTGGCTAAACCTACACTATCAAACGGGAAGGAAAGGAAAACGGTACTTCAGGGCTGTCAAAGAACAATGTATCCAAATAGCCCATTCTAA

>Glyma12g35711.2   sequence type=CDS   gene model=Glyma12g35711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCAAAGAAATGGTTTAAGATAATAGTCAAATTGAAGAAATCGAAGAAAGATAAATCCAAAGAAGAAAAGACCACTGATGAAAATTCAAATGAATACTCCAACGGGAAGCAGAGTACTCGTGAAGAGTCAAGTAGCAATGCCAATGAAGGTTTAATGATGGACCGGACTGTTCCTTCAAGGTTGATGGATGACATTGCAGCTACTCGGATTCAAAATGCATTTCGTTCATTTATGGCAAGAAGAACATTACACCATCTAAGGGGAGCAGAGAAATTCGAAGCTTTAATTCAAGATCACCTGGCCAGAGAGCAAACAGCAACTGCACTAAGCTATATACATTCATGGAGCAGAACACAAGAGCAAATTAGAGCTCGAAGAATCTGTATGATAACAGAAGCCAGGATTAAGCAGAAGAAATTGGAAACCCAGTTAAAAATTGAGGCCAAGATTCAGGAGCTCGAGGTGGAATGGTGCAATGGTTCTGAAACCATGGAAGAAATCATTTCCAGGTTACATCAGCGAGAGGAAGCAGCAATTAAGCGAGAGCGAGCCATGGCATATGCCTTCTCCCATCAGTGGAGGCCAAACTGTAGCCAGTATTTTGGTCAGGCTTCTTATAGCCTTGGTAAGGAAAGTTGGGGTTGGAGCTGGACCGAGCGTTGGGTTGCGGCACGTCCTTGGGAAGTTCGGGTTCGAGGTCAGACCACCAAAACAACAAAACTCAACGGCCATGGGCAGGTGCAAAAAACCAAATTAGACAAGATGAACCAAAATGAAAGCAAAGTAGCCTTGGCTAAACCTACACTATCAAACGGGAAGGAAAGGAAAACGGTACTTCAGGGCTGTCAAAGAACAATGTATCCAAATAGCCCATTCTAA
Predicted protein sequences of Glyma12g35711
>Glyma12g35711.1   sequence type=predicted peptide   gene model=Glyma12g35711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAKKWFKIIVKLKKSKKDKSKEEKTTDENSNEYSNGKQSTREESSSNANEGLMMDRTVPSRLMDDIAATRIQNAFRSFMARRTLHHLRGAEKFEALIQDHLAREQTATALSYIHSWSRTQEQIRARRICMITEARIKQKKLETQLKIEAKIQELEVEWCNGSETMEEIISRLHQREEAAIKRERAMAYAFSHQWRPNCSQYFGQASYSLGKESWGWSWTERWVAARPWEVRVRGQTTKTTKLNGHGQVQKTKLDKMNQNESKVALAKPTLSNGKERKTVLQGCQRTMYPNSPF*

>Glyma12g35711.2   sequence type=predicted peptide   gene model=Glyma12g35711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAKKWFKIIVKLKKSKKDKSKEEKTTDENSNEYSNGKQSTREESSSNANEGLMMDRTVPSRLMDDIAATRIQNAFRSFMARRTLHHLRGAEKFEALIQDHLAREQTATALSYIHSWSRTQEQIRARRICMITEARIKQKKLETQLKIEAKIQELEVEWCNGSETMEEIISRLHQREEAAIKRERAMAYAFSHQWRPNCSQYFGQASYSLGKESWGWSWTERWVAARPWEVRVRGQTTKTTKLNGHGQVQKTKLDKMNQNESKVALAKPTLSNGKERKTVLQGCQRTMYPNSPF*






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