Glyma12g35670 - SoyBase

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Report for Sequence Feature Glyma12g35670

Feature Type:	gene_model
Chromosome:	Gm12
Start:	38791694
stop:	38796485
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g35670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53210	AT	Annotation by Michelle Graham. TAIR10: sodium/calcium exchanger family protein / calcium-binding EF hand family protein \| chr1:19844790-19847533 FORWARD LENGTH=585	SoyBase	E_val: 1.00E-76	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0027	KOG	Calmodulin and related proteins (EF-Hand superfamily)	JGI		ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF44	Panther	CALCIUM BINDING PROTEIN	JGI		ISS
PF01699	PFAM	Sodium/calcium exchanger protein	JGI		ISS
PF10591	PFAM	Secreted protein acidic and rich in cysteine Ca binding region	JGI		ISS
UniRef100_B9S960	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin, putative n=1 Tax=Ricinus communis RepID=B9S960_RICCO	SoyBase	E_val: 3.00E-117	ISS
UniRef100_I1LV45	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LV45_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g35670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g35670 not represented in the dataset	Glyma12g35670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g35670

Paralog	Evidence	Comments
Glyma13g34750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g35670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g227800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g35670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g35670

Limit To All Plant Sequences

>Glyma12g35670.1   sequence type=CDS   gene model=Glyma12g35670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGAACCATGTCAAATGCATCAGCATGCTTCTTTTTCTTTGCTTTTGTAGTATTAGTAGCACTTCATAATGCTGAATGCCGTTCTCTTCGGCCTAGTGTTTCTGATGGGGTTGATGCAGTTCAATTACCTCAAGAGTCTTCTTATCTACAACTCAAAGACCAAAGTGTTGTTGTCGAGTCTTCTTCTGATGAGCATTTCTGTAAGCAAATGTACGGGTTCTTGCCATGTTCCAATAACATACTTGGCCATCTCTTCCTCATTTTGGTTTATGAGTACTTGTTGTTCCACGGAGAATCATATTTGGCTGCTGGGGGTGAGCAAATCTTCAAGATTCTTGGCCCTGGTGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGTGCTCTTCCTGAGTCATTAATTCTTGTTGTTACTGGACTTTCCAGCGATAAGGAGAGTGCACAAGAGTATGCTTCCACTGGAGTTGGTTTGTTGGCTGGATCATCCATTATGCTTCTGACAGTAGTTTGGGGGACCTGTGTTTTCATTGGCAGACAAAAGTTGAAAAATGACTCTAACTATGGTGGCACAAATTCATCAAGTGGAGGAATAAAAGAATCACTAACTGGTTATGGTATCACTATGGATGTAGATACTAGAAAGATGGCAAGAATCATGGTTTTCTCAGTTATACCACTCCTCATAATGCAGATTCCCAGTATATTCAACTTCTCTTCTATTCCACGCAATGTGACCTTGATGGTTGCTCTTACAGTTGCTGTTGCTTTTCTTATCTCATACTTCATTTACCAGGTCTTTAAACCTCAGATTGAGAAAACAAGACTGGAGTATATAAAACATGATGACTTAATATTAAGAATTTTTCAACGTGTCGAAAAACAAACTCTACAAAAGATCCTGACCGATGATGGGACTCCCAATGTAGCTGCAATAAGTGGGCTGTATCATGAAATTAGTCAACGTGGGGGCAAGGACTTGTTAGCTTCTGAAGTGAAAGAGTTGTTATTTGGAACAAAATTAAATGACACAAATATCAAAGAGGAACAGATAGCAGACATGTTAAAAGTTTTTGACCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGCTTAACAGAATACATTAACCAATCAAAGCATGCTCTGGATAGACAATACCTCCCCAAAGAATCTCTCAACAAAATGTATCAGACTTTTATCAAGCCATGGATTGAACACGTGAGAAAACAACGTGAATTGAAGGGACATCTTATATCTGAAGTCTTGAAGCATGCTCAGAATGATATGGTTGGCCGGCTGCGCCAAGATGATGGCACACCTGACAAAATTGCTATCAAAAGGTTGTTTGAGGAAATTGATGTTAACCAAGATAACCACATTTCAAGATCTGAATTGGAAAAAGTAGTCAAGGACATCCAGTTTGGCAAGGCTGTAGAAACTGAGGAGGCAGTTACAAAACTTGTTCAAGATCTTGATCTCAACAGAGATGATGAAATTAGCGAGACCGAGTTTGTTGAAGGCTTTACAAAATGGATGAACTCAAATTCCAGCCAAGCTGCTAACTCAAAATCTTCGTCTCACGAAATTCGTCGAACCTGGGAAGATGTTGAAAAGGTAATAGAAGAGAATCAAACCAAAGTAACATCTGCATGGTTGACGGCTATAGGATATGTGGTGTTGGGAGTTACTATACTGGCTCTTCTTGCAGAACCCTTAATAGCAAGTGTCCAAAAATTCTCTGAAGAAGCAGGAATTTCATCATTTTTCATCTCATTCATTTTAGTCCCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGACCAGTAATACTTCTCAAACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATCTCTATACTTATATACATGCGTGAGATCACTTGGGAATTCTCCGCTGATGTGCTAGTCGTGGCAATAGTTTGTGCTGTAACGGGCCTCACTGCTAGTTTTCGACCCACTTTTCCTCTTTGGACATCTTTCCCTGCATACCTCATGTACCTAGTAGCATTGCTTTTGGTCTTCGTCCTCAAAGATGTTCTCAATTATGTTTAG

Predicted protein sequences of Glyma12g35670

Limit To All Plant Sequences

>Glyma12g35670.1   sequence type=predicted peptide   gene model=Glyma12g35670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRTMSNASACFFFFAFVVLVALHNAECRSLRPSVSDGVDAVQLPQESSYLQLKDQSVVVESSSDEHFCKQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGALPESLILVVTGLSSDKESAQEYASTGVGLLAGSSIMLLTVVWGTCVFIGRQKLKNDSNYGGTNSSSGGIKESLTGYGITMDVDTRKMARIMVFSVIPLLIMQIPSIFNFSSIPRNVTLMVALTVAVAFLISYFIYQVFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILTDDGTPNVAAISGLYHEISQRGGKDLLASEVKELLFGTKLNDTNIKEEQIADMLKVFDRNGDQIITKEEFVTGLTEYINQSKHALDRQYLPKESLNKMYQTFIKPWIEHVRKQRELKGHLISEVLKHAQNDMVGRLRQDDGTPDKIAIKRLFEEIDVNQDNHISRSELEKVVKDIQFGKAVETEEAVTKLVQDLDLNRDDEISETEFVEGFTKWMNSNSSQAANSKSSSHEIRRTWEDVEKVIEENQTKVTSAWLTAIGYVVLGVTILALLAEPLIASVQKFSEEAGISSFFISFILVPLATNFREATSAIKEASHKKTSNTSQTMYEIYGAVFMNNILGFVVISILIYMREITWEFSADVLVVAIVCAVTGLTASFRPTFPLWTSFPAYLMYLVALLLVFVLKDVLNYV*

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