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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma12g35600

Feature Type:gene_model
Chromosome:Gm12
Start:38730830
stop:38735282
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15110AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3082 (InterPro:IPR021434); Has 77 Blast hits to 77 proteins in 38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:5084394-5085823 REVERSE SoyBaseE_val: 3.00E-79ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF11282PFAM Protein of unknown function (DUF3082) JGI ISS
UniRef100_E1ZJ74UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Chlorella variabilis RepID=E1ZJ74_CHLVA SoyBaseE_val: 2.00E-14ISS
UniRef100_I1LV38UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LV38_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g35600 not represented in the dataset

Glyma12g35600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g34830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g227200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma12g35600.2   sequence type=transcript   gene model=Glyma12g35600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATGGGGCAATTCGCTTTTGACACCAAAAGCCAAACAAACTCCAGAAGAAGATATCTTAGTGGTGGCATAAACACAACAACAACACAAGGAAACACCATTATCATCCCCGAAGCTGGGAACAACACTCCTCAAAATCAAATCTCTGCCATATTATATATCAGATGTTGCACTCTCAGTGCCACCACCACCTTCTCTTCCCACTCACACTCGCACACCACAAAGTTAAACCCCCTCTCTCCATTCTTCCTCCTCTTCACCACAAACCCACCATTCTCCACTCTGTTTCGGCTTCAGCCATTCCTCCATGGGCCGCGCAACTCGCCGATGCAGCAGCAGACATTGACACAGAGGGCCCTGTTGAACTTCCATTCTCTTCCACTCCTTCCATTTTCGCCACCTCCGACGACCCTTCGCCCATCCAAGTCGCTTCCAGTGTTCTCCTCACCGGCGCCGTCTCCGTCTTCCTCTTCCGCTCCCTCCGCCGCAGGGCTCAACGTGTCAAACAATCCCAATTCAGGTCTTCAGGAGAGAAGTCGATAAAGGAAGAAGCATTGGATAGCTTGAAAGCTATGGGGTCGGCTTCAGTGAAGGCTAAGGAGGATTCAGCTTCACCTGTTCAGGCATTGCTTGGGGGAATATCTGCTGGAGTTATTGCTCTTATTCTCTACAAGTTTGCCACTACCATTGAGGCAGCTCTAAACCGACAGACAATTTCAGATAACTTCTCTGACAATAGTGAATGGCTTGACCTACCTTGCAACATTTGTTTTTGGCCTGAATTCCCTTGGTTTATTCCTTTATTCTGGCCAGCTTGCCCTCAAATCCATCATGGGAGATTCAACTGAAAAGGAAACTGAAAGTAAAAGCACTGATCAGCCAAATTTATCAAATTCATCCAATGAGAGTTCCACAGATAAGACTGAATTGAGCAGCAGGAAGGAAGAACAAAGTTCAAATGATGCACAATAGTTACTAGGTGTAAATATAATGAAGTTCAAATCAAGGTCAGCAAATTTTATCCACATGTAAAATTAACATATATCCTTTTTCTTTTGGGAGTAATGTAGGTGGCAAGTTCAATGCAGTTACTAGTCTTAATGTTCAATATTTTGAAAGGTTTATGGAAGCTATATACTCCTGTCCCCTCCTTTACCCTTTCCGTTTGTCAAAATTTTGTCAGTTTTGTTTTGATAGGAAGAAGCTGAGGATTTGCGGTTACTCAATCCATTCAATGAAACATCAATTAAGTTTACAAATTCCACTTGCTGCATTTACATTTCTGTGGCCTTCACCAAAAACTTGTGTTTTATTAGCATCACTTATTTGAGATGAAGAACAAGGTGCATACCCCTAGGCCCTGGTCTATCCTTTGCCACTACTGGTATTTTTGCCAATAAGTGTGTGCCCGGGAAATATAATGGCGAACTGTGCATTGTAGTGATTTTGCTGATTCTCCTTTGCCACCAATTCAAGTTACACAAATCCTTCTAACTGGAAGCTTAAAATTAAAACCATCCCCTGCAATGCAATTTTACAGTCTTATTCCTTAGATATTTGGATTTGGGTCTAGTTCAATTCCAAAAGCTAACTCAAAATGTAAAAATTGTCTTTTACTTGTATACTTTATTTTGGTCATATCATTAATCGATATAGGATTTTCAGCATGCAGTGCATACACACGA

>Glyma12g35600.1   sequence type=CDS   gene model=Glyma12g35600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCACTCTCAGTGCCACCACCACCTTCTCTTCCCACTCACACTCGCACACCACAAAGTTAAACCCCCTCTCTCCATTCTTCCTCCTCTTCACCACAAACCCACCATTCTCCACTCTGTTTCGGCTTCAGCCATTCCTCCATGGGCCGCGCAACTCGCCGATGCAGCAGCAGACATTGACACAGAGGGCCCTGTTGAACTTCCATTCTCTTCCACTCCTTCCATTTTCGCCACCTCCGACGACCCTTCGCCCATCCAAGTCGCTTCCAGTGTTCTCCTCACCGGCGCCGTCTCCGTCTTCCTCTTCCGCTCCCTCCGCCGCAGGGCTCAACGTGTCAAACAATCCCAATTCAGGTCTTCAGGAGAGAAGTCGATAAAGGAAGAAGCATTGGATAGCTTGAAAGCTATGGGGTCGGCTTCAGTGAAGGCTAAGGAGGATTCAGCTTCACCTGTTCAGGCATTGCTTGGGGGAATATCTGCTGGAGTTATTGCTCTTATTCTCTACAAGTTTGCCACTACCATTGAGGCAGCTCTAAACCGACAGACAATTTCAGATAACTTCTCTGTCCGCCAGATAACCATCACCATTAGGACAATAGTGAATGGCTTGACCTACCTTGCAACATTTGTTTTTGGCCTGAATTCCCTTGGTTTATTCCTTTATTCTGGCCAGCTTGCCCTCAAATCCATCATGGGAGATTCAACTGAAAAGGAAACTGAAAGTAAAAGCACTGATCAGCCAAATTTATCAAATTCATCCAATGAGAGTTCCACAGATAAGACTGAATTGAGCAGCAGGAAGGAAGAACAAAGTTCAAATGATGCACAATAG

>Glyma12g35600.2   sequence type=CDS   gene model=Glyma12g35600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCACTCTCAGTGCCACCACCACCTTCTCTTCCCACTCACACTCGCACACCACAAAGTTAAACCCCCTCTCTCCATTCTTCCTCCTCTTCACCACAAACCCACCATTCTCCACTCTGTTTCGGCTTCAGCCATTCCTCCATGGGCCGCGCAACTCGCCGATGCAGCAGCAGACATTGACACAGAGGGCCCTGTTGAACTTCCATTCTCTTCCACTCCTTCCATTTTCGCCACCTCCGACGACCCTTCGCCCATCCAAGTCGCTTCCAGTGTTCTCCTCACCGGCGCCGTCTCCGTCTTCCTCTTCCGCTCCCTCCGCCGCAGGGCTCAACGTGTCAAACAATCCCAATTCAGGTCTTCAGGAGAGAAGTCGATAAAGGAAGAAGCATTGGATAGCTTGAAAGCTATGGGGTCGGCTTCAGTGAAGGCTAAGGAGGATTCAGCTTCACCTGTTCAGGCATTGCTTGGGGGAATATCTGCTGGAGTTATTGCTCTTATTCTCTACAAGTTTGCCACTACCATTGAGGCAGCTCTAAACCGACAGACAATTTCAGATAACTTCTCTGACAATAGTGAATGGCTTGACCTACCTTGCAACATTTGTTTTTGGCCTGAATTCCCTTGGTTTATTCCTTTATTCTGGCCAGCTTGCCCTCAAATCCATCATGGGAGATTCAACTGA

>Glyma12g35600.1   sequence type=predicted peptide   gene model=Glyma12g35600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHSQCHHHLLFPLTLAHHKVKPPLSILPPLHHKPTILHSVSASAIPPWAAQLADAAADIDTEGPVELPFSSTPSIFATSDDPSPIQVASSVLLTGAVSVFLFRSLRRRAQRVKQSQFRSSGEKSIKEEALDSLKAMGSASVKAKEDSASPVQALLGGISAGVIALILYKFATTIEAALNRQTISDNFSVRQITITIRTIVNGLTYLATFVFGLNSLGLFLYSGQLALKSIMGDSTEKETESKSTDQPNLSNSSNESSTDKTELSSRKEEQSSNDAQ*

>Glyma12g35600.2   sequence type=predicted peptide   gene model=Glyma12g35600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHSQCHHHLLFPLTLAHHKVKPPLSILPPLHHKPTILHSVSASAIPPWAAQLADAAADIDTEGPVELPFSSTPSIFATSDDPSPIQVASSVLLTGAVSVFLFRSLRRRAQRVKQSQFRSSGEKSIKEEALDSLKAMGSASVKAKEDSASPVQALLGGISAGVIALILYKFATTIEAALNRQTISDNFSDNSEWLDLPCNICFWPEFPWFIPLFWPACPQIHHGRFN*







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