SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15120 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5088487-5095482 REVERSE LENGTH=1954 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0732 | KOG | AAA+-type ATPase containing the bromodomain | JGI | ISS | |
| PTHR23069 | Panther | TAT-BINDING HOMOLOG 7 | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| UniRef100_Q9LIM2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Similarity to 26S proteasome subunit 4 n=1 Tax=Arabidopsis thaliana RepID=Q9LIM2_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BA8D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BA8D related cluster n=1 Tax=unknown RepID=UPI000233BA8D | SoyBase | E_val: 0 | ISS |
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Glyma12g35580 not represented in the dataset |
Glyma12g35580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g34850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g227000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g35580.2 sequence type=CDS gene model=Glyma12g35580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGGGGTTCGTCGAAGCTCCCGGGTTCGCTGTGCCCCCAGTGCTGCTCGACGCTTCTCCAGCTCCGCCGAAGAAAAGGCGGAAGGTGGGGAAGGGTGGAATTAGCCGTAGTGTGGAGGGTGCTAGGAGATTAGGGCGAAAAAATAAAGGTTCTGGTGGGACTTGGAGTTCTAGGTTGAGATCAAGAGTTGGCAATGTAGGTGTTAGGGTGAAGGAGGAGACAGAATCGCCTCGGGGGAAGAGGAAGCTTTTTGAGGGAATGGTTAGAAGGAGGGGTGATAGGGAGGTTGGTAGGAAAGAGGAGTTGGGAGGTTTGATGCCGAAAGTGGTTAAGTCAAAGAGACCGGGGAGGATTAAAGCCACAAAGCATGAGGAAGGGCATGAAGAGGATGTGTCTGATGGGAGTTTGGAGGAGAGTAAGAGTCAGGAAGTGGAGATTGTGTTGAGCAGTGGTGAGGAGAGTGATTCTGATTCAGAAACCGAATCGTGTGGAGGGGATCGCATGGATGATTCGGATGGAAATACCTCTCCTGTGATAGGGAATGAGGAGGGGAATCTGATGGATGATTCAGATGGAGATGTCTCTCCTATGATAAGGAATGAGGAGGGGGATCAGATGGATGATTTGGATGGAAATGACCCTCTGATGGTAGGGAACGAGGAGAAGAACTTACCCAACGATTTGCAAATAGAGGAATGTGGTGGTAACGCTGAACCGTCTCCAGTGGAACATTTAGTTAAAGTGGATGATCAGTTAGAGAGTGCGAAGGAAAGCAAAAGAGTAGGTGATGTAGCTGAACAGGTAGATAATAAAGGATCTGTTGGTAAGGAGGTTGATGTCAACGAAAATGTCTTGAAAGATGCAAATGATGGCAAGGAAGCTGACGTTGATGAAAATGTCTTGAAAGATGCAAATGTTGGGAGGCTGGATGAGTTGAAACATGCTTCAGTTGACAAGCGTGGTCACCAGCGTATCAAAGAGGGAAGACGGTGTGGTTTGTGCGGTGGAGGGAGCGATGGTAAGCCTCCAAAAAGGTTAGCTCAGGATAATGGTGAAAGTGAGAATGAAGCTTATAGTGGGTCATCATCTTCAGAGGAGACTAATTATGATATCTGGGATGGTTTTGATGATGAACCTGCTTGGCTTGGGCGTCTCTTGGGTCCTATTAATGATCACTGTGGTATTGCTAGAATATGGGTTCATCTGCACTGTGCTGTATGGAGTCCGGAGGTTTATTTTGCTAACTTTGGATGCTTAAAAAATGTGAGGGCTGCACTTTTCCGAGGAAGAGCATTGAAGTGCACTCGCTGTGGGAGGCGAGGGGCAACCACTGGTTGTCGTGTCGATCGTTGTCCAAGAACTTATCACTTGCCTTGTGCAAGAGCAAGTGGTTGCATCTTTGATCATCGTAAATTTCTTATAGCTTGCACAGATCATCGGCATCTCTTCCAACCTTGTGGTAATAAATATTTATCCTGGATAAAGAAGTTGAAGGCAAGGAAAATGATGTGGGAGATAAGGAAGCGATCAAATGAAGCTTGTAGAAAAGATATTGGAGATGAAGAGAGATGGTTGGAAAATTGTGGAGAGGATGAAGAATTTTTGAAACGAGAAAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCAGTGTACATTGGGGGTTCAGAATCTGCCAGTGAAAATTCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCTGTTGTATGAAAGAAGTTGTTATTTTACCTCTGCTATATCCTGAGCTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTCTTGCATGGGCATCCTGGAACTGGGAAAACCTTGGTGGTCCGGGCATTGATAGGTGCATGTTCCCGTGGTGATAAGCGGGTTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAGTATGTTGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAAATAGATGGGCTGGCACCCTGCCGCACTAGGCAGCAAGATCAGACGCATAGCTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCTAGGGGTTCAGTTGTGGTCATAGGTGCGACAAACTGTCCTGAATCTGTTGATCCAGCACTTAGGCGCCCTGGTAGATTTGATCGGGAAATTTATTTTCCATTACCATCAATTGAGGACAGAGCTTCCATTCTCTCACTTCACACCCAGAAGTGGCCAAAACCAATTACTGGATCCTTGCTTGAGTGGATTGCAAGAAAAACATCTGGCTTTGCTGGTGCTGATCTCCAGGCTCTTTGTACCCAAGCGGCGATGAATGCGTTGAAGAGGAATTTCCCTTTGCAAGAAGTCCTGTCTTTAGCTGCTGAAGAAAAACATTCTGGTTCTAAGCACATTCCTCTTCCATCCTTTGCAGTGGAGGAGAGGGATTGGTTAGAGGCTTATTTTTCGTCCCCACTACCTTGCTCCCGGAGAGATGCTGGAAATGCTGCTAATGATGTAGTATGCTACCCTCTTCCCATCCAACTTATTCCTTGTTTATTGCAGCCATTATGCACTCTTCTTGTATCTCTTTATCTTGATGAACGTCTATGGTTACCACTTCCCATATCTAAAGCTGCAACAGTGATAAAGGATGTCATGATTTCTGCTCTAGACAAAAAGCAAAAGCCTTCTGATCACTGGTGGTTGCACATGGATGATTTTCTTCAAGAAACAAACATTGTTTATGAGTTAAAGAGAAACCTTACTTGTTCTGGCATTTTATCTGCCAACGATGGCATTGCTGGTTCTTTTGATACTGTGGATGATGCCAATAATAACAGCTTGAAGTTTGAATCTTCCACAAGGAACCATCTTGGCATGCATAGTGGTTTATGTGCATTGACCAACAAATCAGGATTTCGGATACTAATATCTGGAAATTCACGATCTGGCCAGAGACATCTTGCTTCTTCCCTTCTTCACTGCTTTATTGGTAATATTGAAGTGCAGAAGATTGATATGGCAACTATTTTACAAGAAGGGCATGGAGTAGTGGTGCAAGGGATTGGTCAGATACTAATGAAATGTGCTAGCAGGCAATCTTGCATAGTATTCTTGCCAAGAATTGATTTATGGGCTGTGGAGAAACATTTCCAAATTGCTGAAAGGATAGATTCGTGTTTAACAATGGGCAAGTCTTGTTTCACACCAAACGAAGTTGTTCAGAAGGAAAATGACATTAGTAATGAGAAAAACTCAACTGAGATGACCAAAGGCCAAGCCAACACAAAGGCTTCATATGCCTGGATGTCATTTATTGAGCAGGTGGAATCCATTGATGTATCGACATCCTTGATGATTCTGGCTACTTCAGAAGTTCCCTATACAGAACTTCCGTGCAAAGTAAGAGAATTCTTCAAGAGTTACCAATCTAAAGATGGCCGATCAACTCCTTTGGAGCAGACAATTCCTCGATTCTCTGTGCAAATTGATGAGAATTTTGATCATGACATGGTGATCAATCTATCTGCACTAGAGCTATTGAGAATTGTAGTTGAGCAGCTGGTTCAATTGATTCATCAGAGATCTCATGTTCATATGGGTTCCCAAAAGGGCAGAAGTTATAAATCAATTGAAGTTTCTAAAGATAAGGAGGTATGCCAAAGAAAAGAAGATGGACCAGCTAATGATAAGAGGGAAATCCAACTTGAATCCTTTACCAAAGTTCCACCAACACCCAACAGCAAGTCAATGAAGGGAAAGTCAATCCTGTTATTAGCAATATCCACATTTGGCTATCAAATTCTTTTATACCCACATTTTACTGAACTTTGTTGGGTCACTTCAAAACTCGATGAAGGTCCTTGTACTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCCTGTATAATTCGTCCTAATAATTCACACGACCAGGTGGCAGTATCTTGTAGTTCTGGTGGCACCAAAAGCAGAGAAGCATCTGGTCTGGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTACAAATCAGTTAGGGAAGTTTCCCTTGATGTAAGGAAGGTTCTCGAGATCTTAATTGAGAAAATCAATACCAGAATTCAAGCTGGGAAAGATAGATATCAATATTTTCGTATTTTGTCACAAGTGGCTTATTTGGAAGACATGGTCAACAACTGGGCTTACTCGTTGCTAAGTCTGGAGCAGGATTCCCCTGAGCATAAAATAAAGGCTATACCAGCAAGTGGTGGGCCATTAAACAGTCATCTCACACATGAAAATCACCAAACTGAAGGTGAGGACTGTCATTTAGTTGTTCCTGTAGATGGTAATGATTTGGAGACATTGGAGGGAAGTCAGAAGGAAATTCCTGCTGAAACAACTGGATGTCTTGCCTCTGATGACAAAAATGATAATGCAGACATTTTTGATTGTGATGATGGAAATGCTAGTTCTGAAGGACATCTACAGAACCATTCTTTTTCAGATAAGAATATCAACAACTCTATTGCTGCAAGCCAACCACTTTATCCATCCACAAGTCAGGAGAATGGTATTTTATTTGGACAATCTGAATTTGTAACTGCTGGAAATAATGAAGAGATGGATGGAGAACTGGGGATTTCAAAAGGCTTGAACAAATCCACGTGCACTCAATCTGTGGTCCCTTCTGAAAATGGACTCCACACTGCTTGCGAACCAAAGAAACACGATGTTGAGATTGGGAACATTAGGTCTGATCAGCCTCTTAGCTTGCCCTCTGTAGAGACCGGTGCTAAATCAAGTGATGTTAAATCTGATAAACAAGAGAATGCCCCAGACAGTAATGTCTCTTCAAGTAATGGCTGTGGCCCTGCTGAATCCGGGGTTATTTGCTTGTATCAATGTTGCCCTGCATGTCTCCACAGTCTGCATCATTTGACAAAGAAAATACTTGTTGAAAAGTGGGGTTTAAACAGTGACAAGTGGACAGCAGAAGATGTCCATGATGCTGTTGCATCATTATCTGTGGATCTTATTTCAGCAGTTAGAAAATGCTTTATGCCTGAAGATTTCATTGATTCATCAAATAAAACCTCAAGAAATGAAAAGCGTGGAACATCTCTCGACTGTTTGAAACTGAGCACGTGTAATAATGGAAACCAACGCAAGGATGTTGTGCCAGCTGAATGTGTTTCTCACTCAGCAAGCCAACATGCAACTGCAATGGAAGGTATGGTGCTGAATGAAGAATCATCCAAGCATGATCTTAAATTTGTTTTCAGAGATGGTGTACTAGTTCATTTGGACCCAGACAAGGATGTCTCAGTTCACTGTAAATTTGAGAACTTGTGCCTTTGTTCTCTAAGAGAGTTGATAGTAATGAAAAAGCGCCCTTTTGATTAG
>Glyma12g35580.2 sequence type=predicted peptide gene model=Glyma12g35580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWGFVEAPGFAVPPVLLDASPAPPKKRRKVGKGGISRSVEGARRLGRKNKGSGGTWSSRLRSRVGNVGVRVKEETESPRGKRKLFEGMVRRRGDREVGRKEELGGLMPKVVKSKRPGRIKATKHEEGHEEDVSDGSLEESKSQEVEIVLSSGEESDSDSETESCGGDRMDDSDGNTSPVIGNEEGNLMDDSDGDVSPMIRNEEGDQMDDLDGNDPLMVGNEEKNLPNDLQIEECGGNAEPSPVEHLVKVDDQLESAKESKRVGDVAEQVDNKGSVGKEVDVNENVLKDANDGKEADVDENVLKDANVGRLDELKHASVDKRGHQRIKEGRRCGLCGGGSDGKPPKRLAQDNGESENEAYSGSSSSEETNYDIWDGFDDEPAWLGRLLGPINDHCGIARIWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPCGNKYLSWIKKLKARKMMWEIRKRSNEACRKDIGDEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSESASENSFQGWESVAGLKDVICCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACSRGDKRVAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNCPESVDPALRRPGRFDREIYFPLPSIEDRASILSLHTQKWPKPITGSLLEWIARKTSGFAGADLQALCTQAAMNALKRNFPLQEVLSLAAEEKHSGSKHIPLPSFAVEERDWLEAYFSSPLPCSRRDAGNAANDVVCYPLPIQLIPCLLQPLCTLLVSLYLDERLWLPLPISKAATVIKDVMISALDKKQKPSDHWWLHMDDFLQETNIVYELKRNLTCSGILSANDGIAGSFDTVDDANNNSLKFESSTRNHLGMHSGLCALTNKSGFRILISGNSRSGQRHLASSLLHCFIGNIEVQKIDMATILQEGHGVVVQGIGQILMKCASRQSCIVFLPRIDLWAVEKHFQIAERIDSCLTMGKSCFTPNEVVQKENDISNEKNSTEMTKGQANTKASYAWMSFIEQVESIDVSTSLMILATSEVPYTELPCKVREFFKSYQSKDGRSTPLEQTIPRFSVQIDENFDHDMVINLSALELLRIVVEQLVQLIHQRSHVHMGSQKGRSYKSIEVSKDKEVCQRKEDGPANDKREIQLESFTKVPPTPNSKSMKGKSILLLAISTFGYQILLYPHFTELCWVTSKLDEGPCTDVSGPWRGWPFNSCIIRPNNSHDQVAVSCSSGGTKSREASGLVRGLIAVGLSAYRGVYKSVREVSLDVRKVLEILIEKINTRIQAGKDRYQYFRILSQVAYLEDMVNNWAYSLLSLEQDSPEHKIKAIPASGGPLNSHLTHENHQTEGEDCHLVVPVDGNDLETLEGSQKEIPAETTGCLASDDKNDNADIFDCDDGNASSEGHLQNHSFSDKNINNSIAASQPLYPSTSQENGILFGQSEFVTAGNNEEMDGELGISKGLNKSTCTQSVVPSENGLHTACEPKKHDVEIGNIRSDQPLSLPSVETGAKSSDVKSDKQENAPDSNVSSSNGCGPAESGVICLYQCCPACLHSLHHLTKKILVEKWGLNSDKWTAEDVHDAVASLSVDLISAVRKCFMPEDFIDSSNKTSRNEKRGTSLDCLKLSTCNNGNQRKDVVPAECVSHSASQHATAMEGMVLNEESSKHDLKFVFRDGVLVHLDPDKDVSVHCKFENLCLCSLRELIVMKKRPFD*
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