SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G23550 | AT | Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr3:8448435-8450649 REVERSE LENGTH=469 | SoyBase | E_val: 1.00E-100 | ISS |
| GO:0006855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015238 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015297 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: antiporter activity | SoyBase | N/A | ISS |
| KOG1347 | KOG | Uncharacterized membrane protein, predicted efflux pump | JGI | ISS | |
| PTHR11206 | Panther | MULTIDRUG RESISTANCE PUMP | JGI | ISS | |
| PTHR11206:SF12 | Panther | MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER-RELATED | JGI | ISS | |
| PF01554 | PFAM | MatE | JGI | ISS | |
| UniRef100_B9SQH4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TRANSPARENT TESTA 12 protein, putative n=1 Tax=Ricinus communis RepID=B9SQH4_RICCO | SoyBase | E_val: 2.00E-116 | ISS |
| UniRef100_UPI000233CE84 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CE84 related cluster n=1 Tax=unknown RepID=UPI000233CE84 | SoyBase | E_val: 0 | ISS |
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Glyma12g35420 not represented in the dataset |
Glyma12g35420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g35065 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g225600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g35420.2 sequence type=CDS gene model=Glyma12g35420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGCACTGGAAACACTGCGGACAAGGATTTGGTGCAAAGGAATACCAAATGCTGGGAATTTACCTACAAGGCTCTTGCATCATATCTCTTATTTTTTCAATCATTATATCCATTATTTGGTTCTATACAGAGCCCATCCTAGTGTTACTTCATCAATCTCCCGACATTGCAAGAACAGCTGCACTTTATATGAAGTTTCTTATCCCGGGAGTGTTTGCATATAGCTTCTTGCAAAATATCTCGAGGTTTCTCCAGACACAATCTGTGGTAATGCCATTGGTTGCACTCTCAGCTCTTCCACTGTTGATCCATATTGGTATTGCATATGGCTTGGTTCAGTGGCCAGGTCTGAGTTTTGCAGGTGCACCACTTGCAGCTTCTATTTCACAATGGATATCAATGCTATTATTGGCCTTGTATGTCATGTATGCTAAGAAGTTCAAGCAGGCATGGCAAGGATTTTCAATGCATTCATTCCATTACGTATTTACAAACATGAAACTGGCCCTGCCCTCTGCTGCAATGGTATGTATTCGGCTTTTGGTTTTGGTTTTCTTGGCTGGACTGTTGCCTGACTCTCAGATAACAACTTCGTTGATTGCAATATGTTTAAACACTCAATTCATAGCGCACATGGTCCCTGTTGGTCTCGGTGCGGCTGAAAGGTTAGTTGAGGAGTTTGCTTCAGTGACACCCTTGCTTGCCATTTCCATAGTACTAGATGCTGTCGAAGGTGTCATACAAGGGGTGGCCAGAGGATGTGGTTGGCAGCACTCAACTGGTTTATGGATTGGTCTAATTTGTGGGCAGCTCTGTCAAGTTGGGACACTCTTCCTTTTCTTAAGGCGTGCCAAATGGACTAAATTGAATCTCTCTGGGGTCAAAGATAAAGAGCATCCTCTCGTTGTTTAA
>Glyma12g35420.2 sequence type=predicted peptide gene model=Glyma12g35420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GHWKHCGQGFGAKEYQMLGIYLQGSCIISLIFSIIISIIWFYTEPILVLLHQSPDIARTAALYMKFLIPGVFAYSFLQNISRFLQTQSVVMPLVALSALPLLIHIGIAYGLVQWPGLSFAGAPLAASISQWISMLLLALYVMYAKKFKQAWQGFSMHSFHYVFTNMKLALPSAAMVCIRLLVLVFLAGLLPDSQITTSLIAICLNTQFIAHMVPVGLGAAERLVEEFASVTPLLAISIVLDAVEGVIQGVARGCGWQHSTGLWIGLICGQLCQVGTLFLFLRRAKWTKLNLSGVKDKEHPLVV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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