Glyma12g35330 - SoyBase

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Report for Sequence Feature Glyma12g35330

Feature Type:	gene_model
Chromosome:	Gm12
Start:	38443493
stop:	38447084
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g35330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15350	AT	Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr3:5167250-5168882 FORWARD LENGTH=424	SoyBase	E_val: 0	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG0799	KOG	Branching enzyme	JGI		ISS
PTHR19297	Panther	GLYCOSYLTRANSFERASE 14 FAMILY MEMBER	JGI		ISS
PTHR19297:SF2	Panther	GALACTOSYLTRANSFERASE-RELATED	JGI		ISS
PF02485	PFAM	Core-2/I-Branching enzyme	JGI		ISS
UniRef100_G7IRB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7IRB3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LV11	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LV11_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g35330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g35330

Paralog	Evidence	Comments
Glyma13g35180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g35330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g224700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g35330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g35330

Limit To All Plant Sequences

>Glyma12g35330.1   sequence type=CDS   gene model=Glyma12g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTCTTAAACGTAGAGAAGAAATGGTTATATCCTTTCATAGTGTGTTTTGCCATATGCATGCTCTTACTAGTCTCATCCTTCAACATGGATCTTGTCTCTTCAATTCACTCCATCAATTCACTGTTTTTCTTTCTCCCATCTCATTTACGCCCAAACCAAACTGAGCCGGGTTTTGTGGAGAGGAAGGCTTCTCCTGCTCCAGCGCCGGCTAGGCCTGTGCTTCCTCGTTTCGCTTATTTGATTTCAGGCTCCAAAGGTGATTTGGAAAAGCTTTGGAGAACCCTTCATGCACTTTATCATCCCCTAAACCATTATGTTGTTCATATGGACCTTGAGTCGCCGCTTGAGGAAAGGATGGAGATTGCACATAGAATTGAAAGACAACATGTCTTCGCTGAGGTTGGAAACGTTTTTGTAATCACAAAGGCTAACATGGTCACTTACCGAGGACCAACGATGGTTGCTAATACTCTTCATGCTTGTGCCATTCTTCTCAAGAGAAGTAAAGACTGGGATTGGTTTATTAATCTTAGTGCTTCAGACTATCCTCTTGTGACACAGGATGATCTGCTATATACTTTTTCAGATTTAGATAGAGGCCTTAACTTCATTGAGCACACAAGTCGGTTAGGGTGGAAGTTTGATAAACGAGCAATGCCTTTAATTGTAGACCCTGGGCTTTACATGTCAACCAAATCTGATGTATTTTGGGTCAATCCAAAGAGACCTTTGCCAACAGCATTTAAATTATTCACTGGTTCAGCATGGACGGTATTATCACACGACTTTGTTGAATATATTGTATGGGGATGGGACAATCTGCCAAGGACCCTTCTCATGTACTACACTAATTTTCTGTCTTCCCCTGAAGGCTACTTCCAGACTGTTGCATGCAATGCGCCAGAATGGGCTAAAACCCTTGTCAATAGTGACTTGCATTACATTGCCTGGGATGTCCCTCCTAAACAGCACCCTCACGTCCTTAACATCAACGACACAGACAAAATGGTTGAAAGTGGTGCTGCCTTTGCAAGAAAATTTAAGCAAGATGATCCAGCCTTGGATTGGATTGATAAAATGATTCTCCGCAAGAGAAATGGACTATTTCCACTCGGTGGTTGGTGCACCGGCAGACCCAAATGCTCCGAGATTGGGAACATTTATAAACTCAAACCTGGTCCGGGATCTCAAAGGCTTCATCGCCTTGTCGCGGGGCTAACTTTGAAGGCTAAATCTGGTGAGGATCAGTGTAAATAG

Predicted protein sequences of Glyma12g35330

Limit To All Plant Sequences

>Glyma12g35330.1   sequence type=predicted peptide   gene model=Glyma12g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFLNVEKKWLYPFIVCFAICMLLLVSSFNMDLVSSIHSINSLFFFLPSHLRPNQTEPGFVERKASPAPAPARPVLPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVVHMDLESPLEERMEIAHRIERQHVFAEVGNVFVITKANMVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLLYTFSDLDRGLNFIEHTSRLGWKFDKRAMPLIVDPGLYMSTKSDVFWVNPKRPLPTAFKLFTGSAWTVLSHDFVEYIVWGWDNLPRTLLMYYTNFLSSPEGYFQTVACNAPEWAKTLVNSDLHYIAWDVPPKQHPHVLNINDTDKMVESGAAFARKFKQDDPALDWIDKMILRKRNGLFPLGGWCTGRPKCSEIGNIYKLKPGPGSQRLHRLVAGLTLKAKSGEDQCK*

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