SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53040 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF616) | chr1:19764567-19766870 REVERSE LENGTH=540 | SoyBase | E_val: 0 | ISS |
| GO:0006672 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ceramide metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PTHR12956 | Panther | ALKALINE CERAMIDASE-RELATED | JGI | ISS | |
| PTHR12956:SF1 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04765 | PFAM | Protein of unknown function (DUF616) | JGI | ISS | |
| UniRef100_B7F980 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: cDNA, clone: J075118M20, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7F980_ORYSJ | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CE80 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CE80 related cluster n=1 Tax=unknown RepID=UPI000233CE80 | SoyBase | E_val: 0 | ISS |
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Glyma12g35300 not represented in the dataset |
Glyma12g35300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g35210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g224400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g35300.3 sequence type=transcript gene model=Glyma12g35300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACACACTTTATAATCTGTTTTATTTTGCTTCTGTGTGCCTCTTAAGATATAATATAATGTACCTTAGAGTTTGGTTTGCTATCATTTCAATGACACCGAGCATCTTATAAATGCGTTCTTAAGATAAGCCATAGTATAATATGTTTCAGTTTTGTTTTTTTGGCACTTTTACTTGTCTTGTTTGTTCTACTGTTTTGTTTTTCTTTCTAAAGTTGAAGACATATTGGTTTGGTTAAGAGTTAAGTCATCATTTGAGATGTCGTGTTTTGGATTAGAACTTTCACTGGTTCTTATACCTGTGTTTATCTTCATAACCTTTTGATTATCTGCAGTGTAAATTCTGTATGTTTTATGGTGTGTTTTTGGCATTGTGATGAACTAGGTGGAAACATCAATAGTGAAATTGAAGATACGCGATCTTATGCCATTACTAGGTATGAATTTTTAAAACCTCGTGGAGTAATAGAAGACAAGTCAGAGGATAGTAATTCTTCTAGAGTGTTCTCATTGACAAGTAGACATAGAAGTACAGCTAGGCCTCCTCCTGCTCCTAATTCACTGTCCTTGTCCAAGCCAACAAGAAAAAAGGGATATTTTCCTACTTGGGGACATCGTTGTGACCATTTTGCATTTCCTCCTCCTCCACCAGCTGATAGAAGACGACCTGGACCACGCCCATGCCCTGTGTGTTATATTCCAGTGGAGCAAGCTATAGCTAGTATGCCAAGTTCCCCATCAGAATCTCCCATACTTCGCACTTTGACATATGTGCATGATGAAAATCCAATTGAAAGTGAGCCACATGGTGGCTCTGATTTTGGTGGATACCCTTCTCTGGAAGAAAGGGATGCTGCTTTTAATATCAAAGAGACCATGAAAGTGCACTGTGGATTTGTCAAAGGAAGCAGACCTGGTCGCCAGACAGGATTTGATTTTGATGAGGCGGATCTCTTAGAGTTGGATCAATACCATGATGTCATTGTTGCATCTGCCATATTTGGAAACTATGATGTTATACAGCAGCCCAGGAACATCAGTTCAGAAGCAAAGAAAAACATTCCTTTCTATATGTTTATTGATGAAGAAACAGAAATGTATATGAAGAATGCCAGTATTTTGAGTAGCAGCAGGAGAGTTGGATTATGGAGAATCATCATTGTCCGTAATATTCCTTATGCTGATTCTCGGCGTAACGGAAAGGTTCCAAAGCTTCTTTTACACAGGATCTTCCCCAATGTCCGATATTCAATATGGATTGATGGGAAGCTTGAGCTTGTTGTGGACCCATATCAAGTTCTTGAAAGGTTCTTGTGGCGCCAAAATGCTACTTTTGCAATTTCAAGACACTATAGACGCTTTGATGTATTTGTTGAGGCTGAGGCTAATAAAGCTGCTGGGAAATATGAAAATGCTTCCATTGATCATCAAATTCAATTTTATAAATACCACGACGGTTTAACTCATTATTCCAGGGCTAAGCTTCCTATAACTAGTGATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGATCAGTTGAGCTTTTCCACAGTAAGAGACAAAATAATGGCAAAAACTGATTGGAGTATTAACATGTTTATGGATTGTGAAAGACGTAACTTTGTGATACAGGCTTACCATAGAGACATATTGGAGCAAATGCCTCCTCCAGCTGTTGTAACCCGGCGTCCTGGTCAACCTGCTTCTTATACCAGTAGGCCTCAGATGAAGAGTCATCCTAGGCGTGGGAAAGTAGACAAGAGATCAGGTTCAAAGCGTCATCATAGAGTAGTAGGCACTGTTCTTACGAACCACATGTTGATTTAGTGTCATCTTCTTGCTAGAGGTTTTTTGGTTCCTTTAAGTGTAAATGCATGCATTCTTTGTTGCAAATTATACTTCAAAGAGCCCCCAACAGTTTTGATATTGTTGCTTAATGAATTGTAAATATCTTTGCTATAACTGACAAGATCCTTACTACCTTTTTCCAAAAGGGAAAGAAAACAAAAGGGGGTTCTCAGCAGTGCATTTTGCACTCTTGAATTATTAATTTCTCCTCCTTCTGCCTAGTGTTGCTTTACTTGTAGAACGTTTTTGGCTACTGTTAAAATTGTGCTTCTGTTGGCTGTTCGTAATCATGCTTGAAAATATTAACAGAAATAGCATTTGGCATGGTGTGA
>Glyma12g35300.2 sequence type=CDS gene model=Glyma12g35300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGGAGTGTCATTGGGTGTGCGCACAGGGAGCTATGGGACGCTGCAGCAAAACGGCACCGTTTCTCCCAAGCCCATGCTTGTGCGTAGACCTTCAAAGACGCTCCTCTACAACCCCAGAGAGAAAGAGAGGGGTTTCTTTTTCTTTTGCCGGCTACTTGGAAGAGGCAAGGTCGCAATGCTTCTCATGCTTGCCCTTGGCCTCTGTGTTTTCGTTTTTGGTTGCTTTACTGTTTACAGAGGTGGAAACATCAATAGTGAAATTGAAGATACGCGATCTTATGCCATTACTAGGTATGAATTTTTAAAACCTCGTGGAGTAATAGAAGACAAGTCAGAGGATAGTAATTCTTCTAGAGTGTTCTCATTGACAAGTAGACATAGAAGTACAGCTAGGCCTCCTCCTGCTCCTAATTCACTGTCCTTGTCCAAGCCAACAAGAAAAAAGGGATATTTTCCTACTTGGGGACATCGTTGTGACCATTTTGCATTTCCTCCTCCTCCACCAGCTGATAGAAGACGACCTGGACCACGCCCATGCCCTGTGTGTTATATTCCAGTGGAGCAAGCTATAGCTAGTATGCCAAGTTCCCCATCAGAATCTCCCATACTTCGCACTTTGACATATGTGCATGATGAAAATCCAATTGAAAGTGAGCCACATGGTGGCTCTGATTTTGGTGGATACCCTTCTCTGGAAGAAAGGGATGCTGCTTTTAATATCAAAGAGACCATGAAAGTGCACTGTGGATTTGTCAAAGGAAGCAGACCTGGTCGCCAGACAGGATTTGATTTTGATGAGGCGGATCTCTTAGAGTTGGATCAATACCATGATGTCATTGTTGCATCTGCCATATTTGGAAACTATGATGTTATACAGCAGCCCAGGAACATCAGTTCAGAAGCAAAGAAAAACATTCCTTTCTATATGTTTATTGATGAAGAAACAGAAATGTATATGAAGAATGCCAGTATTTTGAGTAGCAGCAGGAGAGTTGGATTATGGAGAATCATCATTGTCCGTAATATTCCTTATGCTGATTCTCGGCGTAACGGAAAGGTTCCAAAGCTTCTTTTACACAGGATCTTCCCCAATGTCCGATATTCAATATGGATTGATGGGAAGCTTGAGCTTGTTGTGGACCCATATCAAGTTCTTGAAAGGTTCTTGTGGCGCCAAAATGCTACTTTTGCAATTTCAAGACACTATAGACGCTTTGATGTATTTGTTGAGGCTGAGGCTAATAAAGCTGCTGGGAAATATGAAAATGCTTCCATTGATCATCAAATTCAATTTTATAAATACCACGACGGTTTAACTCATTATTCCAGGGCTAAGCTTCCTATAACTAGTGATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGATCAGTTGAGCTTTTCCACAGTAAGAGACAAAATAATGGCAAAAACTGATTGGAGTATTAACATGTTTATGGATTGTGAAAGACGTAACTTTGTGATACAGGCTTACCATAGAGACATATTGGAGCAAATGCCTCCTCCAGCTGTTGTAACCCGGCGTCCTGGTCAACCTGCTTCTTATACCAGTAGGCCTCAGATGAAGAGTCATCCTAGGCGTGGGAAAGTAGACAAGAGATCAGGTTCAAAGCGTCATCATAGAGTAGTAGGCACTGTTCTTACGAACCACATGTTGATTTAG >Glyma12g35300.3 sequence type=CDS gene model=Glyma12g35300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTGTTTTTGGCATTGTGATGAACTAGGTGGAAACATCAATAGTGAAATTGAAGATACGCGATCTTATGCCATTACTAGGTATGAATTTTTAAAACCTCGTGGAGTAATAGAAGACAAGTCAGAGGATAGTAATTCTTCTAGAGTGTTCTCATTGACAAGTAGACATAGAAGTACAGCTAGGCCTCCTCCTGCTCCTAATTCACTGTCCTTGTCCAAGCCAACAAGAAAAAAGGGATATTTTCCTACTTGGGGACATCGTTGTGACCATTTTGCATTTCCTCCTCCTCCACCAGCTGATAGAAGACGACCTGGACCACGCCCATGCCCTGTGTGTTATATTCCAGTGGAGCAAGCTATAGCTAGTATGCCAAGTTCCCCATCAGAATCTCCCATACTTCGCACTTTGACATATGTGCATGATGAAAATCCAATTGAAAGTGAGCCACATGGTGGCTCTGATTTTGGTGGATACCCTTCTCTGGAAGAAAGGGATGCTGCTTTTAATATCAAAGAGACCATGAAAGTGCACTGTGGATTTGTCAAAGGAAGCAGACCTGGTCGCCAGACAGGATTTGATTTTGATGAGGCGGATCTCTTAGAGTTGGATCAATACCATGATGTCATTGTTGCATCTGCCATATTTGGAAACTATGATGTTATACAGCAGCCCAGGAACATCAGTTCAGAAGCAAAGAAAAACATTCCTTTCTATATGTTTATTGATGAAGAAACAGAAATGTATATGAAGAATGCCAGTATTTTGAGTAGCAGCAGGAGAGTTGGATTATGGAGAATCATCATTGTCCGTAATATTCCTTATGCTGATTCTCGGCGTAACGGAAAGGTTCCAAAGCTTCTTTTACACAGGATCTTCCCCAATGTCCGATATTCAATATGGATTGATGGGAAGCTTGAGCTTGTTGTGGACCCATATCAAGTTCTTGAAAGGTTCTTGTGGCGCCAAAATGCTACTTTTGCAATTTCAAGACACTATAGACGCTTTGATGTATTTGTTGAGGCTGAGGCTAATAAAGCTGCTGGGAAATATGAAAATGCTTCCATTGATCATCAAATTCAATTTTATAAATACCACGACGGTTTAACTCATTATTCCAGGGCTAAGCTTCCTATAACTAGTGATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGATCAGTTGAGCTTTTCCACAGTAAGAGACAAAATAATGGCAAAAACTGATTGGAGTATTAACATGTTTATGGATTGTGAAAGACGTAACTTTGTGATACAGGCTTACCATAGAGACATATTGGAGCAAATGCCTCCTCCAGCTGTTGTAACCCGGCGTCCTGGTCAACCTGCTTCTTATACCAGTAGGCCTCAGATGAAGAGTCATCCTAGGCGTGGGAAAGTAGACAAGAGATCAGGTTCAAAGCGTCATCATAGAGTAGTAGGCACTGTTCTTACGAACCACATGTTGATTTAG
>Glyma12g35300.2 sequence type=predicted peptide gene model=Glyma12g35300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTGVSLGVRTGSYGTLQQNGTVSPKPMLVRRPSKTLLYNPREKERGFFFFCRLLGRGKVAMLLMLALGLCVFVFGCFTVYRGGNINSEIEDTRSYAITRYEFLKPRGVIEDKSEDSNSSRVFSLTSRHRSTARPPPAPNSLSLSKPTRKKGYFPTWGHRCDHFAFPPPPPADRRRPGPRPCPVCYIPVEQAIASMPSSPSESPILRTLTYVHDENPIESEPHGGSDFGGYPSLEERDAAFNIKETMKVHCGFVKGSRPGRQTGFDFDEADLLELDQYHDVIVASAIFGNYDVIQQPRNISSEAKKNIPFYMFIDEETEMYMKNASILSSSRRVGLWRIIIVRNIPYADSRRNGKVPKLLLHRIFPNVRYSIWIDGKLELVVDPYQVLERFLWRQNATFAISRHYRRFDVFVEAEANKAAGKYENASIDHQIQFYKYHDGLTHYSRAKLPITSDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIMAKTDWSINMFMDCERRNFVIQAYHRDILEQMPPPAVVTRRPGQPASYTSRPQMKSHPRRGKVDKRSGSKRHHRVVGTVLTNHMLI* >Glyma12g35300.3 sequence type=predicted peptide gene model=Glyma12g35300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVCFWHCDELGGNINSEIEDTRSYAITRYEFLKPRGVIEDKSEDSNSSRVFSLTSRHRSTARPPPAPNSLSLSKPTRKKGYFPTWGHRCDHFAFPPPPPADRRRPGPRPCPVCYIPVEQAIASMPSSPSESPILRTLTYVHDENPIESEPHGGSDFGGYPSLEERDAAFNIKETMKVHCGFVKGSRPGRQTGFDFDEADLLELDQYHDVIVASAIFGNYDVIQQPRNISSEAKKNIPFYMFIDEETEMYMKNASILSSSRRVGLWRIIIVRNIPYADSRRNGKVPKLLLHRIFPNVRYSIWIDGKLELVVDPYQVLERFLWRQNATFAISRHYRRFDVFVEAEANKAAGKYENASIDHQIQFYKYHDGLTHYSRAKLPITSDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIMAKTDWSINMFMDCERRNFVIQAYHRDILEQMPPPAVVTRRPGQPASYTSRPQMKSHPRRGKVDKRSGSKRHHRVVGTVLTNHMLI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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