Glyma12g34890 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma12g34890): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma12g34890): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma12g34890

Feature Type:	gene_model
Chromosome:	Gm12
Start:	37998360
stop:	38002624
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g34890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54380	AT	Annotation by Michelle Graham. TAIR10: protein kinase family protein \| chr5:22077313-22079880 REVERSE LENGTH=855	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0009742	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF418	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF11721	PFAM	Di-glucose binding within endoplasmic reticulum	JGI		ISS
UniRef100_I1LUX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LUX1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LK35	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase THESEUS 1 n=1 Tax=Arabidopsis thaliana RepID=THE1_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g34890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g34890 not represented in the dataset	Glyma12g34890 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g34890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g220400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g34890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g34890

Limit To All Plant Sequences

>Glyma12g34890.1   sequence type=CDS   gene model=Glyma12g34890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATGATGAAACTTGTAAAGTGGGTTTCCTTTGTTTTGGTTGTTTATTTGTTTTTGGTGAATGGTTCATTTGCCACATTCACTCCTCGTGATAATTATCTAATTGCATGTGGTTCCTCCCAAAGCATAACTTCCCAAGACCGCACTTTTGTTCCTGATTCACAACATTCTTCACTAAAGTTGAAAACTGGGAATTCTGTTGTTGCTAGTTCCAATTCTAGTGTCCCTTCCCCAATATATCAATCAGCTAGGATTTTCACTGAGAAAGCTTCTTATAGGTTTCAGGTTGAGGAAGGTAGGCACTGGCTTAGGCTATATTTTTCTCCTCTTCCCAACTCTGCCCATAATTTGACTGCTGCTGCTATAACAGTGGTCACTGATGATTTTGTTCTATTGTGCAACTTCTCCTTTAGGAACTACAATGGTTCTTATATGTTTAGGGAGTATGCCATCAATGTTACCTCTGATACCTTCACTGTCACCTTCATTCCTTCAAATGGTTCAGTAGCCTTTGTCAATGCAATTGAAGTTGTGTCAATGCCAAATGACTTGTTTGTTGATCAGGCATTGGCCCTTAACCCAACTGCAGCATTCAATGGCCTTTCTGAGCTTGCTTTTGAGACCGTTTATCGGTTAAACATAGGAGGTCCGTTGCTCACTCCCCAAAATGACACATTAGGAAGGACTTGGGAGAATGATCAGAAATACCTCCATGTGAATAGTTCAGTCACTAAGGTGTCTGTTAACCCTTCCAGTATTAAGTATCATGCAGGTGTTACGCCTGAGACCGCACCGAATTGGGTCTATGCCACTTCTGAAGTAATGGGGGATGCAAATGTACCTGACTCAAATTTCAACATTACTTGGGTCTTTTCTGTGGATCCAAACTTCTCCTATTTCATCCGGGTGCACTTTTGTGATATTATTAGCAAGTCTCTCAACACTTTAGTGTTCAATTTGTTCATAAACACTGACATAGCTCTTGGAAGCCTTGACCTCTCATCCATAACTAATGACTTGGCTGTGCCTTACTACAAGGACTTTGTTTCCAATGCCTCAGCAGACTCCAACATTTTGACAGTGAGTGTTGGTCCTGATTCAATGGCAGATATTACAAATGCCACTATGAATGGTCTTGAGGTTATGAAGATAAGCAATGCATTCAAGAGCTTGGATGGACTTTCTTCAGTTGCGAGTCTCCTTCCCAGTTCAGCATCAAGCAAAAGCAAGATGGGAATAATAGTTGGTTCTTCTGTTGGGGCTATGGCTGCCATTGCTTTAGCTGGTTTGTGTTATTGCTGCCTTGGGAGATTCAAATCAAAGTCTACTCAACAGGGCCATTCTTGGCTGCCTTTACCCTTATATGGAAACTCTCAGACCATGACAAAAATGTCAACAACTTCACAGAAGAGTGCAACTGCAAGCATCATTTCTTTAGCTTCATCAAATCTCGGACGGTTGTTCACCTTCCAAGAGATCCTTGATGCAACCAACAAATTTGATGAGAAGCTGCTTCTTGGTGTTGGTGGTTTTGGCAGGGTTTATAAAGGGACTCTTGAAGATGGGACCAATGTGGCTGTTAAAAGGGGGAACCCCAGATCTGAACAAGGTCTTGCTGAATTCCGAACAGAAATTGAGATGTTATCCAAGCTTCGCCATCGCCATCTTGTGTCCCTCATTGGCTATTGCGATGAGAGATCAGAAATGATTCTTGTTTATGAATACATGGCTAATGGACCTCTCAGGAGTCATTTGTATGGAACTGACTTACCACCTCTATCATGGAAGCAGCGGCTTGAAATTTGCATCGGAGCAGCAAGAGGCCTTCATTATCTCCACACAGGAGCATCTCAAAGCATAATTCACCGCGATGTAAAGACAACTAACATCCTCTTAGATGATAACTTTGTTGCTAAGGTTGCTGACTTTGGCCTCTCCAAAACTGGTCCTGCTCTTGATCAGACTCATGTGAGCACTGCTGTTAAAGGTAGTTTCGGTTATCTTGATCCTGAATACTTCAGAAGGCAACAGCTTACAGAGAATCAGATTCATCTACACCCCACAATGATATGA

Predicted protein sequences of Glyma12g34890

Limit To All Plant Sequences

>Glyma12g34890.1   sequence type=predicted peptide   gene model=Glyma12g34890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMMKLVKWVSFVLVVYLFLVNGSFATFTPRDNYLIACGSSQSITSQDRTFVPDSQHSSLKLKTGNSVVASSNSSVPSPIYQSARIFTEKASYRFQVEEGRHWLRLYFSPLPNSAHNLTAAAITVVTDDFVLLCNFSFRNYNGSYMFREYAINVTSDTFTVTFIPSNGSVAFVNAIEVVSMPNDLFVDQALALNPTAAFNGLSELAFETVYRLNIGGPLLTPQNDTLGRTWENDQKYLHVNSSVTKVSVNPSSIKYHAGVTPETAPNWVYATSEVMGDANVPDSNFNITWVFSVDPNFSYFIRVHFCDIISKSLNTLVFNLFINTDIALGSLDLSSITNDLAVPYYKDFVSNASADSNILTVSVGPDSMADITNATMNGLEVMKISNAFKSLDGLSSVASLLPSSASSKSKMGIIVGSSVGAMAAIALAGLCYCCLGRFKSKSTQQGHSWLPLPLYGNSQTMTKMSTTSQKSATASIISLASSNLGRLFTFQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDDNFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTENQIHLHPTMI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain