Glyma12g34610 - SoyBase

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Report for Sequence Feature Glyma12g34610

Feature Type:	gene_model
Chromosome:	Gm12
Start:	37760569
stop:	37761441
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g34610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27280	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein \| chr4:13663770-13664162 REVERSE LENGTH=130	SoyBase	E_val: 2.00E-30	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009612	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF148	Panther	CALCIUM-BINDING EF HAND FAMILY PROTEIN	JGI		ISS
UniRef100_I1LUU8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LUU8_SOYBN	SoyBase	E_val: 1.00E-78	ISS
UniRef100_Q2HVQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding EF-hand n=1 Tax=Medicago truncatula RepID=Q2HVQ3_MEDTR	SoyBase	E_val: 8.00E-48	ISS

Expression Patterns of Glyma12g34610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g34610 not represented in the dataset	Glyma12g34610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g34610

Paralog	Evidence	Comments
Glyma13g35890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g34610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g217700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g34610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g34610

Limit To All Plant Sequences

>Glyma12g34610.1   sequence type=CDS   gene model=Glyma12g34610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCAGGACTACCTCTTGGACTTTGAGGACTACTTCCCTTCGATGATTGCACGCATGGGAGCGGAAGGGTTCATTGGAGAGCTCTGCAACGGGTTCCGCTTGCTCATGGACGTGAATAAGGGCCTCATCACCTTCGAGAGCCTCAAGCTCAACTGCTACCTGCTCGGCCTCGACGTCATGGACGACGAGCTCGCCTGCATGCTCATGGAGGGCGATTTGGACGGCGATGGCGCTCTAAGCCAAATGGAGTTTTGCATTCTCATGTTTAGGCTCAGCTCTTGCTTGTGCACTCCTCACGGTGGTGGTGGTGGTGATGGTGGTAGTGGTGGTAGTGGTGGGGATCCCATGTTGATGAATGTAATGTAA

Predicted protein sequences of Glyma12g34610

Limit To All Plant Sequences

>Glyma12g34610.1   sequence type=predicted peptide   gene model=Glyma12g34610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQDYLLDFEDYFPSMIARMGAEGFIGELCNGFRLLMDVNKGLITFESLKLNCYLLGLDVMDDELACMLMEGDLDGDGALSQMEFCILMFRLSSCLCTPHGGGGGDGGSGGSGGDPMLMNVM*

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